Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1662 ATGAGGCCAGAACAATTGCATGTAGCACAACAAATCAGGCGTGACAAATTAAGAATCCAGAATCATATGCAACAAGAATTCCCTAACAATAATATAGAAGAATTATTATCACTACATCAACCACCACAAGGTTTCAATAACATGGATCTTCTTCAACTCCGAAACGCCGCCAACAACAACAACAACAACAACAACAACATGCTTGATGATGAAACAGGTCATTATTCAACTAATCAACTCATAAATACTTTTTCAACAACATCAAATCCTTTACACCGAAACCCTTTGGATTATGAGCTCGCTATAGCCGAACCAAGTAGCAACATTAATCGACTCGGTTACTATTACACAAATGAAACCAATATTCCTAACTCTTTCTTAACTTCTCATGAACAAGAACAACTTAACAGTAATGATATTTTCAAGTCTTCAACTTGTTCTTCAGAAATGGCTTCTTTAATGCACCATCATAGCATTTGGGGAGGTGTGAATAGTCATAATACTAATACTAATAGTATTGTGCCTATATTTCATGAAAATCAAGCAAATCCTCATCAATGGACAAATAGAAGCATCACTGTTGAAAACAACAACAACAACATGGGTGGTTCTTTCTTTAATGATTATAATCCTCAAGGTTTAAATTTATCACTTTCATCAAATTCACAATCAAAACAACCTTCAAGTACTTCTACTTCAAATTTTGACCAAGGTTCTTTAAATATTGTGAAAGTTTCTAAAGAATATGTAAAACCAATTCATCAAGAACAACAACAATCTAGTACTAGTAGTATTGGTTTTAGGAATGTTGGTCCATTAGGACCATTTACTGGGTATGCAACAATTTTGAAAAATTCAAGGTTTTTAAAACCATGTCAAGAGTTGTTAGAACAATGTTGTTGTTGTGAAAATGTTCCAAAATGGGTTTCTAGAGATGTTGTTGTTGATGATGAAAGTGGTGGTGTTGTTGTTTCTGCAAAAGGTAGTACTAGTAATTCAGGTTCATCTTGTTCTATGTTGTATGGTTCAAAAGAGAAAGAGAATAGTAATGTTGATGGAGGAATTGGGAATAATTTTTGTCTTTCTTCTTCTACTTCTTCTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAGTTACTGTTCATGCACGAAGAGGTGACAAGAAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTATCATCATTTGAATCAGTAGCTGGTCTTAGTTCAGCTACACCATACATTTCATTGGCTCTAAAATCACTATCAAAACACTTCAAATGCCTTAAAAATGCTATCACAGATCAACTCAAGCATACATGTCAAGTATTGGGAGAGGATTTTTCAATACTACCAACCACCACAAGTAGTAGTAGTAAATTTGATAGCAACAATAATAACATGACAAGGCTAAGGGGCATGAATCAGAGTATTCAAAAGAACAAATCTGGAGGGAATAGTAATGTTGACTTTGTTGAACCTCAACAACATGTTTGGAGGCCCCAGAGAGGGTTGCCAGAACGTTCAGTGGCAATTCTTAAAGCTTGGTTATTCGAACATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACACAAACAGGTCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGTGTATGGAAACCAATGGTTGAGGAAATACACATGCTTGAATCAAAAGGCACAACAGAAGTTCAGAATCAGAACAATAGTAAAAATGAAGCCTCAAATGTTCTACCACATGAAAAACAATTTCAGTGTTTGGAAGTTGGGTCATCATCAGGAATTAACAATGTTGAAAATGAAGAGCAATGGAATAATATTCAAGAGAAGAGGTTTAAATTGGAAAATGATCAAATTACATCAAACATGGATACAACGGTTATGGGTTTTATGCCATATCAACGCGGATCCGTGTCGCTGACTTTGGGTTTGAGACAAGGGGTTGAAAATGCGCAACACCAACAACAGCAGTTGCAACAAGAGGTGGAGCTTAGACATCAATATGGAGGGCACATGTTCCATGATTTTGTGGGTTAA 2076 0.3584 MRPEQLHVAQQIRRDKLRIQNHMQQEFPNNNIEELLSLHQPPQGFNNMDLLQLRNAANNNNNNNNNMLDDETGHYSTNQLINTFSTTSNPLHRNPLDYELAIAEPSSNINRLGYYYTNETNIPNSFLTSHEQEQLNSNDIFKSSTCSSEMASLMHHHSIWGGVNSHNTNTNSIVPIFHENQANPHQWTNRSITVENNNNNMGGSFFNDYNPQGLNLSLSSNSQSKQPSSTSTSNFDQGSLNIVKVSKEYVKPIHQEQQQSSTSSIGFRNVGPLGPFTGYATILKNSRFLKPCQELLEQCCCCENVPKWVSRDVVVDDESGGVVVSAKGSTSNSGSSCSMLYGSKEKENSNVDGGIGNNFCLSSSTSSSRPECQKNKAQLLFMHEEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKSLSKHFKCLKNAITDQLKHTCQVLGEDFSILPTTTSSSSKFDSNNNNMTRLRGMNQSIQKNKSGGNSNVDFVEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTTEVQNQNNSKNEASNVLPHEKQFQCLEVGSSSGINNVENEEQWNNIQEKRFKLENDQITSNMDTTVMGFMPYQRGSVSLTLGLRQGVENAQHQQQQLQQEVELRHQYGGHMFHDFVG* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1662 691 ProSiteProfiles 'Homeobox' domain profile. 498 561 IPR001356 GO:0003677
Tpr4g1662 691 SMART HOX_1 501 565 IPR001356 GO:0003677
Tpr4g1662 691 Gene3D - 504 566 - -
Tpr4g1662 691 SUPERFAMILY Homeodomain-like 503 567 IPR009057 -
Tpr4g1662 691 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 661 - -
Tpr4g1662 691 CDD homeodomain 501 562 IPR001356 GO:0003677
Tpr4g1662 691 Pfam Homeobox KN domain 518 557 IPR008422 GO:0003677|GO:0006355
Tpr4g1662 691 Pfam Associated with HOX 282 436 IPR006563 -
Tpr4g1662 691 SMART prehox3 277 437 IPR006563 -
Tpr4g1662 691 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 46 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1662 Tpr-Chr4 17121264 17131686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1662 260 571 Homeobox Transcription Factor Family AT5G02030 47.634 6.75e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr4g1662 POX 8.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1662 - - cam:101502049 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1662 4 17121264 17131686 Tpr4g1662 4 17121264 17131686 ECH
Tpr7g4604 7 54481570 54485472 Tpr4g1662 4 17121264 17131686 PCT