Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1653 ATGGTTTCTGACGCTAGCAAGAAGAAAGCCGCTCAAAAGAAAGCTGCCGCAGCCGCCAAACGAGGTGGTAAAGCCGCCGTTGCAGCTGCTTCTTCCAAGGCCGCTGATAAAGTTGCCGATAAGATTGCCGATATTCGCATATCGGATCGCACTTGCACCGGTGTTCTCTGTTCTCATCCTCTCTCTAGAGATATCCGGATAGAGTCTCTATCGGTTACTTTCCATGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGATTACTTGGGTTAAATGGTTGTGGAAAGTCCACTTTACTTACTGCAATAGGGATGCGGGAACTTCCAATTCCCGAACACATGGATATTCATCACCTTAGCAGAGAAATTGAAGCCTCTGACATGTCTGCTTTGGAAGCTGTAATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGCACGAAGCTGAAATTTTGGCAGCTCAGGATGACGGAGGTGGTGAAGCCCTCGAACGTATTTATGAACGATTGGATGCCCTAGATGCATCAACGGCAGAAAAGCGTGCCGCTGAAATTTTACATGGTCTTGGTTTTGACAAGGCAATGCAAGCTAAGAAGACTCGTGATTTTTCTGGAGGCTGGAGAATGCGAATTGCATTAGCAAGAGCTTTATTTATGAATCCCACTGTTCTTTTACTCGATGAACCAACCAATCATCTCGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTTATTTCACATTCCCAGGATTTCCTTAACGGTGTCTGCACAAATATTATCCACATGCAAAGTAAGAAATTGAAGATGTATACTGGTAATTATGATCAATATGTTCAGACTCGTGGTGACTTAGAAGAGAACCAGATGAAGCAGTACAAGTGGGAGCAAGAGCAGATTGCCAACATGAAGGAATATATTGCTCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAAAGTAAGGAAAAAACACTGGCAAAAATGGAACGAGGTGGACTTACCGAGAAGGTAGTTAGAGATCAAGTTTTAGTATTCCGCTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTACAGTTTTCTGAAGTAAGTTTTGGGTACACTCCTGATCATCTCATCTACAAAAACATTGATTTTGGGGTTGACTTAGACTCTAGGATTGCTCTTGTTGGACCAAATGGTGCCGGAAAGAGCACACTGCTGAAGCTAATGACAGGTGATTTGTTTCCTAGTGATGGCATGGTCAAGCGTCATAATCATCTTAGAATTGCACAATATCATCAGCACTTGGCTGAAAAGTTAGACTTAGATGTTCCTGCCCTTCAGTTTATGATGAATGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCTGCTATTGGGAGGTTTGGACTGACAGGTAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAAAAGAGTCGAGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATCGAAACAATTGACTCACTGGCTGAGGCATTGAATGAGTGGGATGGCGGCTTGGTGCTTGTTAGTCACGATTTTAGGCTCATTAATCAGGTTGCACATGAAATATGGGTGTGTGAAAATCTAAAAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCAAAGGCAGGGATAGTGGACTGA 1776 0.4324 MVSDASKKKAAQKKAAAAAKRGGKAAVAAASSKAADKVADKIADIRISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIHHLSREIEASDMSALEAVISCDEERLKLEHEAEILAAQDDGGGEALERIYERLDALDASTAEKRAAEILHGLGFDKAMQAKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKMYTGNYDQYVQTRGDLEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTPDHLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDVPALQFMMNEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENLKVTRWEGDIMDFKKHLKAKAGIVD* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1653 591 CDD ABCF_EF-3 376 568 - -
Tpr4g1653 591 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 591 - -
Tpr4g1653 591 SMART AAA_5 89 291 IPR003593 -
Tpr4g1653 591 SMART AAA_5 401 568 IPR003593 -
Tpr4g1653 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 570 IPR027417 -
Tpr4g1653 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 298 IPR027417 -
Tpr4g1653 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 591 IPR003439 GO:0005524
Tpr4g1653 591 CDD ABCF_EF-3 65 282 - -
Tpr4g1653 591 Pfam ABC transporter 276 348 IPR032781 -
Tpr4g1653 591 Gene3D - 341 588 IPR027417 -
Tpr4g1653 591 PANTHER - 1 591 - -
Tpr4g1653 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 305 IPR003439 GO:0005524
Tpr4g1653 591 Pfam ABC transporter 392 523 IPR003439 GO:0005524
Tpr4g1653 591 Pfam ABC transporter 83 237 IPR003439 GO:0005524
Tpr4g1653 591 Gene3D - 65 329 IPR027417 -
Tpr4g1653 591 ProSitePatterns ABC transporters family signature. 209 223 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1653 Tpr-Chr4 16952489 16957370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1653 196 263 Calmodulin-binding Proteins AT2G36910 41.429 9.64e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1653 K06185 - gmx:100809491 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1653 4 16952489 16957370 Tpr4g1653 4 16952489 16957370 ECH
Tpr7g4620 7 54625348 54629442 Tpr4g1653 4 16952489 16957370 PCT