Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1650 ATGGGAAGAGCACCATGTTGTGACAAAACAAGTGTCAAGAGAGGTCCATGGTCACCAGAAGAAGACTCTAAACTTAAAGACTACATAAGCAAACATGGCACTGGTGGGAATTGGATTTCTCTTCCTCATAAAGCTGGTCTGAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGAGATTTTTCTGATGAGGAAGATAGAATAATTTGTAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTGCCAGGTAGGACTGACAATGATATCAAGAACTATTGGAACACAAAATTGAAGAAAAAACTTATGGCTTTGCAGTTTCCAACATCATCACATCAAAGAAAACCACAGTTTCCACCTTTTCCTTCTACTCATCCATTCTCAAACTACTTTACTACTACTCACACCCCCTTCTCAGATTTTCAAACCATTTCACTTCCATCAAATAATAACTATCCAAACACAAGTTTCAACCCCTTTTACCAAAATCAAGAGTCTATGATTAGTCTTAATCCTTCCATGCAATATAATAACAACATGTTTATGTTTGGAAGTGAAGGAAGTTGTAGTTCATCTGATGGAAGTTGCAAGGAAATTAAGCAAGAAGAAATTGGTTATCATCACATGAATAGTGGTGGATTTGATGATTACAACAATAATAACTTTATGATAAATTGTAACAATGGAAGTGTTGGTGAAAATATTAACCAATATGAAGAAAAAACAAGTGGAGTTGGATATGTTTATAATAATGGTCAAAGTCAAACATTAACTCCATTACTAGATTATGGTCTTGAAGATATTAAGCAATTGATTAGTAGTGATAACAAAGATTTTAGTGTTGATGAGATTCATAAGAGTGAAGAAAATGGTATGTATTACTTCCATTATTGA 939 0.3408 MGRAPCCDKTSVKRGPWSPEEDSKLKDYISKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALQFPTSSHQRKPQFPPFPSTHPFSNYFTTTHTPFSDFQTISLPSNNNYPNTSFNPFYQNQESMISLNPSMQYNNNMFMFGSEGSCSSSDGSCKEIKQEEIGYHHMNSGGFDDYNNNNFMINCNNGSVGENINQYEEKTSGVGYVYNNGQSQTLTPLLDYGLEDIKQLISSDNKDFSVDEIHKSEENGMYYFHY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1650 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr4g1650 312 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr4g1650 312 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr4g1650 312 Gene3D - 70 133 - -
Tpr4g1650 312 PANTHER TRANSCRIPTION FACTOR RAX3 1 293 - -
Tpr4g1650 312 PANTHER OS09G0431300 PROTEIN 1 293 - -
Tpr4g1650 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr4g1650 312 SMART sant 67 115 IPR001005 -
Tpr4g1650 312 SMART sant 13 64 IPR001005 -
Tpr4g1650 312 CDD SANT 16 62 IPR001005 -
Tpr4g1650 312 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr4g1650 312 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr4g1650 312 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tpr4g1650 312 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1650 Tpr-Chr4 16919343 16921684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1650 1 121 MYB Transcription Factor Family AT5G57620 85.950 3.00e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g1650 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1650 K09422 - gmx:100779919 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1650 4 16919343 16921684 Tpr4g1650 4 16919343 16921684 ECH
Tpr7g4623 7 54655657 54657714 Tpr4g1650 4 16919343 16921684 PCT