Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1636 ATGTTGACGCAAAATCTTATCGTAGTCCCCCAAAATCTATGTTCCCGCCAATTACATCCCGGCAACACTATTCCGTCTTCCGTTATTAACTTATTATTCCGCATTCCCGTTAATTCTTCTTGTTCTTCAAATTTAACATTTCCTCTCTCACTAACCCCTCGCCGTGAAATGTCAAAGCCACCCTCCGCCTTCGACGCACTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAGAAACCACCACCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTCCTCCTTCTCCTTCTCCATCTCCACTCTCCCCTCCCGCTCAAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTAAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCCAAGGGGATAATTTCCGAATTGAAGGAGCTAATTCCGCAACTGAAGAAGAAACCACCGAGTTTCGATCCAAGTTCTGTTGTTTGCTGGGAGAAGGAAAAACCTGTACCATTTTTATTCCTTTGTTTAGCCTTTGACATGATTAACGAAGAAAGTGGAAGGATTGTGAAAACTGACATTGTGTGTAATCTGTTGAGGACGGTGATATACACTACACCGGAGGATCTTGTGCCGGTTGTTTATCTTTCTGCTAATAGAATTGCTCCGGCTCACGAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATTAAGGCGCTCGCCGAGGCGTGTGGAAGGACTGAGCAGCAGATTAGGATTCAGTACAAGGAAAAAGGTGACTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAGGAAGGTTTTCAAGACATTTCATCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCTGAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTGCTTACGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACGTGCGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACCTGGAGAATGGCTCAGTAGAAATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATTAAGGTTGAGGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACCTTAGAATCCGTAGAGAGCATCTCTACGCCTCTTTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCAACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGCTGTGAGGGATTGATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTGGATTTGGTACCTATTGGTGCTTTCCACGGACGCGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAACGATAATGAAGAGTTTCAAAGTATTGCCAAGATAGGAACTGGATTCAAAGAGGAAGTCCTTGAAGAACGTTCTACTAGTCTTCGCTCTAAAGTGATTCCCAAACCAAAGTCATATTATCAATATGGAGAATCAACCAATCCTGATGTATGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCAAAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAACAGGCCTCTTCGTCTGAGCAGGTTGCTGAAATGTATACTGCCCAAAAACACAATCACAACGACAAACAAGATGACGAAGAAGATGATTAA 2364 0.4302 MLTQNLIVVPQNLCSRQLHPGNTIPSSVINLLFRIPVNSSCSSNLTFPLSLTPRREMSKPPSAFDALMSGARAAAAKKKPPPSSSSPKKRKSPPPPPSPSPSPLSPPAQNPNNNLKTLETVKTVEPPNKIRNTSSSSKGIISELKELIPQLKKKPPSFDPSSVVCWEKEKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRIQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLTDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVEVCVFAFDLLYLNGQALLQENLRIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSIAKIGTGFKEEVLEERSTSLRSKVIPKPKSYYQYGESTNPDVWFEASEVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYTAQKHNHNDKQDDEEDD* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1636 787 MobiDBLite consensus disorder prediction 753 787 - -
Tpr4g1636 787 Gene3D - 425 623 - -
Tpr4g1636 787 PANTHER DNA LIGASE 1 80 787 - -
Tpr4g1636 787 CDD Adenylation_DNA_ligase_I_Euk 404 622 - -
Tpr4g1636 787 MobiDBLite consensus disorder prediction 86 108 - -
Tpr4g1636 787 Gene3D - 150 417 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr4g1636 787 Pfam ATP dependent DNA ligase C terminal region 644 755 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tpr4g1636 787 Gene3D DNA ligase/mRNA capping enzyme 444 569 - -
Tpr4g1636 787 SUPERFAMILY Nucleic acid-binding proteins 627 773 IPR012340 -
Tpr4g1636 787 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 439 447 IPR016059 GO:0003909
Tpr4g1636 787 ProSitePatterns ATP-dependent DNA ligase signature 2. 593 619 IPR016059 GO:0003909
Tpr4g1636 787 ProSiteProfiles ATP-dependent DNA ligase family profile. 521 657 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr4g1636 787 Pfam ATP dependent DNA ligase domain 415 619 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr4g1636 787 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 231 770 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tpr4g1636 787 MobiDBLite consensus disorder prediction 70 109 - -
Tpr4g1636 787 Gene3D - 624 786 IPR012340 -
Tpr4g1636 787 MobiDBLite consensus disorder prediction 758 772 - -
Tpr4g1636 787 CDD OBF_DNA_ligase_I 627 770 - -
Tpr4g1636 787 Pfam DNA ligase N terminus 173 348 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr4g1636 787 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 407 625 - -
Tpr4g1636 787 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 80 787 - -
Tpr4g1636 787 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 156 405 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1636 Tpr-Chr4 16696769 16704453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1636 49 787 Core DNA Replication Machinery Family AT1G08130 66.887 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1636 K10747 - gmx:100783155 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1636 4 16696769 16704453 Tpr4g1636 4 16696769 16704453 ECH