Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1634 ATGTTCGCATTACATTTCAAACCGTATTTTTCTCTTCCGCCGTTATTATTCCGCATTTCCGTTAACACTTCTTCTTCCAATTTAACATTTCCTCTCTCACTAACCCCTCGCCGTAAAATGTCAAAGCCACCACCTTCCGCCTTCGACAAACTCATGTCCGGTGCACGCGCCGCCGCAGCCAAGAAGAAACCACCACCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTCCTCCTTCTCCATCTCCATCTCCACTCTCCCCTCCCGCTCAAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCCAAGGGGATAATTTCCGAATTGAAGGAGCTAATTCCACAGCTGAAGAAGAAACCGCCGAGTTTCGATCCAAGTTCGGTCGTTTGCTGGGAGAAAAACAAACCTGTGCCGTTTTTGTTCCTTTGTTTGGCGTTTGATATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGTAATCTGTTGAGGACGGTGATATACACTACACCGGAGGATCTTGTGCCGGTTGTTTATCTTTCTGCTAATAGAATTGCTCCGGCTCACGAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATTAAGGCTCTCGCTGAGGCGTGTGGAAGGACTGAGCAGCAGATTAGGATTCAGTACAAGGAAAAAGGTGACTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAGGAAGGTTTTCAAGACATTTCATCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGATTGTGAACCTCTATATATAATCCGTTTGCTACAGGCAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTAAACCGCCTCCAGAAATTAAGTCTCCATTTGAAGAGGCTGCAATGATTGTTAAAAAAGTTTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTACGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAATTTCAGGATGTAGAGTTTACGTGTGAGTACAAATATGATGGAGAGCGTGCTCAGGTGATGCTTCATGGTCATATATTCCATCAGAAATGCACGGATTATGATACTTATTATGCAATAACATTAGTTGTATTGAGACAGATACATTACATGGAGAATGGCTCGGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGCTAAAGAAACCAACAGTATCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGCACCTTAATGGCCAAGCACTTCTTCAGGAAAACCTTAAAATCCGTAGAAAGCATCTCTACGCCTCTTTTGAGGTAGAGTCTGGATTCTTTCAGTTTGCGACATCAACGACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTAATCATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGACAATATAGGGGACTCCCTGGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGTAAACGCACAGGAGTGTATGGTGCTTATCTCGTTGCTTGCTATGACAAAGAGAACGAAGAATTTCAAAGTATTGTCAAGTTAGCAACTGGATTCACAGAAGAGGAGCTTGAAGAACGTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCAAAGGCATATTATAAATGTGGAGAATCAATCAATCCTGATGTCTGGTTTGAAGATAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCTGACAAAACTCCTGACCAGGCCACTCCGTCTGAGCAGATTGCTGAAATGTATAATAAGCAAAAACACAACCAGACCAACAACCAGGATGACGATGAAGATGATGATTAA 2403 0.4249 MFALHFKPYFSLPPLLFRISVNTSSSNLTFPLSLTPRRKMSKPPPSAFDKLMSGARAAAAKKKPPPSSSSPKKRKSPPPPPSPSPSPLSPPAQNPNNNLKTLETVETVEPPNKIRNTSSSSKGIISELKELIPQLKKKPPSFDPSSVVCWEKNKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRIQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQAKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAMIVKKVYSVLPDYDKIVAALLTDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQVMLHGHIFHQKCTDYDTYYAITLVVLRQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKPTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLHLNGQALLQENLKIRRKHLYASFEVESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIGAFHGRGKRTGVYGAYLVACYDKENEEFQSIVKLATGFTEEELEERSAILRSKIIPKPKAYYKCGESINPDVWFEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKTPDQATPSEQIAEMYNKQKHNQTNNQDDDEDDD* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1634 800 CDD OBF_DNA_ligase_I 639 784 - -
Tpr4g1634 800 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr4g1634 800 MobiDBLite consensus disorder prediction 53 92 - -
Tpr4g1634 800 Pfam DNA ligase N terminus 157 332 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr4g1634 800 Gene3D - 134 398 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr4g1634 800 MobiDBLite consensus disorder prediction 70 92 - -
Tpr4g1634 800 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 423 431 IPR016059 GO:0003909
Tpr4g1634 800 Gene3D DNA ligase/mRNA capping enzyme 399 456 - -
Tpr4g1634 800 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 460 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tpr4g1634 800 MobiDBLite consensus disorder prediction 770 788 - -
Tpr4g1634 800 Gene3D - 636 799 IPR012340 -
Tpr4g1634 800 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 395 631 - -
Tpr4g1634 800 Pfam ATP dependent DNA ligase domain 399 436 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr4g1634 800 Pfam ATP dependent DNA ligase domain 460 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tpr4g1634 800 Gene3D DNA ligase/mRNA capping enzyme 460 581 - -
Tpr4g1634 800 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 140 389 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tpr4g1634 800 Gene3D - 582 635 - -
Tpr4g1634 800 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Tpr4g1634 800 CDD Adenylation_DNA_ligase_I_Euk 388 634 - -
Tpr4g1634 800 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tpr4g1634 800 MobiDBLite consensus disorder prediction 765 800 - -
Tpr4g1634 800 PANTHER DNA LIGASE 1 62 799 - -
Tpr4g1634 800 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Tpr4g1634 800 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 62 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1634 Tpr-Chr4 16677960 16685196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1634 38 799 Core DNA Replication Machinery Family AT1G08130 63.835 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1634 K10747 - vvi:100256907 974.541