Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1632 ATGGAAACCATATCAGAAATTGAAACTTTTGGCTGCACACATTATAGAAGGAGATGCAAGATCATAGCACCATGTTGTAATCAAGTTTTTGGCTGTAGGCACTGCCACAATGAAGCTAAGAACTCAAATGAGATTAACCTTGTTGATCGTCATGATATCCCGCGGCATGAAGTTAAAAAGGTTATATGCTCCTTATGTGACACAGAACAAGATGTTCAACAATACTGTATAAATTGTGGAGTTTGTATGGGAGAGTACTTTTGTGGTACATGCAAATTTTTTGATGATGATATTTCAAAGCAACAATTCCACTGTGATGAATGTGGCATCTGCAGAACTGGTGGCAAGGATAACTTTTTCCATTGCAAAAGATGTGGATGTTGCTATTCCAAGGAAATCAAAGAGGGACATCATTGTGTAGAAAGAGCAATGCATCATAATTGTCCTATTTGCTTTGAGTATTTATTTGACACATTAAGAGAAACTAGCGTCTTACCTTGTGGCCATACTATACATTTTGAGTGTGTTAAAGAGATGGAAAAACATCACAGGTACTCATGTCCTGTTTGCTCAAAATCCATATGTGATATGTCAAGTGTGTGGAAGAAACTTGATCAAGTGATTTCCTCAATTCCAATGCCTGAATCATACAAAAATAAGAAGGTATGGATACTTTGCAATGATTGTGGTGTAAACTCTCATGTGCAATTCCACATTGTGGCACATAAGTGTTTAAGTTGCAACTCATACAACACAAGGCAATTACAAGGAATACCTTCTAGCAGCTCAATGTCTTCTAGGGTGACAGAGATGGTTAATTAG 822 0.371 METISEIETFGCTHYRRRCKIIAPCCNQVFGCRHCHNEAKNSNEINLVDRHDIPRHEVKKVICSLCDTEQDVQQYCINCGVCMGEYFCGTCKFFDDDISKQQFHCDECGICRTGGKDNFFHCKRCGCCYSKEIKEGHHCVERAMHHNCPICFEYLFDTLRETSVLPCGHTIHFECVKEMEKHHRYSCPVCSKSICDMSSVWKKLDQVISSIPMPESYKNKKVWILCNDCGVNSHVQFHIVAHKCLSCNSYNTRQLQGIPSSSSMSSRVTEMVN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1632 273 ProSiteProfiles Zinc finger RING-type profile. 148 191 IPR001841 -
Tpr4g1632 273 Pfam CHY zinc finger 12 93 IPR008913 GO:0008270
Tpr4g1632 273 ProSiteProfiles Zinc finger CTCHY-type profile. 83 147 IPR017921 -
Tpr4g1632 273 SUPERFAMILY Zinc hairpin stack 84 141 IPR037275 -
Tpr4g1632 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 220 IPR013083 -
Tpr4g1632 273 Gene3D - 221 261 - -
Tpr4g1632 273 SMART ring_2 148 190 IPR001841 -
Tpr4g1632 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 7 271 - -
Tpr4g1632 273 SUPERFAMILY RING/U-box 146 196 - -
Tpr4g1632 273 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 7 271 - -
Tpr4g1632 273 Pfam Ring finger domain 147 190 IPR001841 -
Tpr4g1632 273 Pfam Zinc-ribbon 195 253 IPR039512 -
Tpr4g1632 273 ProSiteProfiles Zinc finger CHY-type profile. 5 81 IPR008913 GO:0008270
Tpr4g1632 273 SUPERFAMILY CHY zinc finger-like 9 83 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1632 Tpr-Chr4 16662475 16665507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1632 6 266 C2H2 Transcription Factor Family AT3G18290 39.405 1.63e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1632 K10144 - gmx:100812709 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1632 4 16662475 16665507 Tpr4g1632 4 16662475 16665507 ECH