Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1628 ATGGGAGAACTAGTTATGGAGGAACAAAAACTGATGGATTTTTCTAAGAAAGATGCAACTCATATTGCCAAAGGAAAACGCACTAAGAGGTTAAGACTTTTGTCTCCTTGTGGTGTTGTTTCTACTAGTATCACATCTAGTGAAGAAAATGGGTATTTTGATGATGAGATTGAAGATGATGATGAAGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGGAAATCACAAGCAACATGATGATGATGACGATGACGACCGCGGCGACAACAGAAGGGAAAAGGGTAGTAATGGAAATAAAAAAATTGCTCAGATTGTAACTGCTGGTGCTACTGCTACCACAAAAGCTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCATTGGGTGGTCATAGAGCAAGTCACAAAAAGCCTAAAATTATGGCTGAGGAGAAAAAAGAGAAACTACCATCATCGCCACCGTCCTCAATCTCATCTCATGATTCGCAGTCAGTTAAACTGATTGCGAATCATGATGAGCTTGAAGAAGCCGAGATACCTCGTGGCGGGCCTACAATTTCTTTTCTAATGGGGAATCAAGGATTGAAAGCTATCAATGGAAACAAGGGTAAGATTCATGAGTGTTCTATTTGTGGATCAGAATTCACATCTGGACAAGCATTAGGTGGACACATGAGGAGACATAGGACATCCTCCGCGAACGCACCTATCGCGGAGGAGAGAGTAGTTCGGCCGCAGAATATTCTACAGTTTGATCTTAATCTTCCGGCTCCCGAAGAGGATCTCCGGGAATCAAAGTTTCAGTTTCCGGCTACACAAAAATCTATGGTGATGTCTGCTGCTCCGGCTTTGGTGGGTTGTCATTATTAA 903 0.4142 MGELVMEEQKLMDFSKKDATHIAKGKRTKRLRLLSPCGVVSTSITSSEENGYFDDEIEDDDEEEDMANCLILLAQGGNHKQHDDDDDDDRGDNRREKGSNGNKKIAQIVTAGATATTKAGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMAEEKKEKLPSSPPSSISSHDSQSVKLIANHDELEEAEIPRGGPTISFLMGNQGLKAINGNKGKIHECSICGSEFTSGQALGGHMRRHRTSSANAPIAEERVVRPQNILQFDLNLPAPEEDLRESKFQFPATQKSMVMSAAPALVGCHY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1628 300 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Tpr4g1628 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Tpr4g1628 300 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Tpr4g1628 300 MobiDBLite consensus disorder prediction 78 101 - -
Tpr4g1628 300 SMART c2h2final6 124 146 IPR013087 -
Tpr4g1628 300 SMART c2h2final6 217 239 IPR013087 -
Tpr4g1628 300 MobiDBLite consensus disorder prediction 140 174 - -
Tpr4g1628 300 MobiDBLite consensus disorder prediction 74 105 - -
Tpr4g1628 300 MobiDBLite consensus disorder prediction 147 161 - -
Tpr4g1628 300 Gene3D Classic Zinc Finger 203 261 - -
Tpr4g1628 300 Gene3D Classic Zinc Finger 91 178 - -
Tpr4g1628 300 Pfam C2H2-type zinc finger 124 149 - -
Tpr4g1628 300 Pfam C2H2-type zinc finger 217 241 - -
Tpr4g1628 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Tpr4g1628 300 PANTHER ZINC FINGER PROTEIN ZAT5 5 300 - -
Tpr4g1628 300 SUPERFAMILY beta-beta-alpha zinc fingers 123 239 IPR036236 -
Tpr4g1628 300 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 5 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1628 Tpr-Chr4 16637003 16638259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1628 18 300 C2H2 Transcription Factor Family AT2G28200 40.000 9.72e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g1628 zf-C2H2_6 4.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1628 - - cam:101512661 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1628 4 16637003 16638259 Tpr4g1628 4 16637003 16638259 ECH
Tpr4g1628 4 16637003 16638259 Tpr1g1161 1 10482033 10484001 ECH
Tpr4g1628 4 16637003 16638259 Tpr1g4312 1 50192718 50194097 ECH
Tpr7g3740 7 46291310 46292519 Tpr4g1628 4 16637003 16638259 ECH
Tpr1g4312 1 50192718 50194097 Tpr4g1628 4 16637003 16638259 ECH
Tpr7g3709 7 45901207 45902411 Tpr4g1628 4 16637003 16638259 PCT