Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1622 ATGGCTATTGCTGGTTTGCACAGTGTGTCTGTGCTTGACTCGTCTTTTTTGAGGGACTCGCAGTCTCAGGCGTCTAGAAGGAGGGGAGATGGAAGAAGGGGAAGCACCCGGTCGTCTTCACTTTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGCGGTGAGTCATGTTCAAGGAAGACCGGGTGAAGTACTACTTGAACAAAGGAACAATGGGTCGGTTGTGGATCTTTCACTTGAAGATACACCTGATACACCAGAGATTGAAGAAAGACATGATTTAGAAGATGCAGTTTTGGGTGAGACTGAGTCTGAAACATGGTCACAGTCGCAAAGTCAGACTGAATCCCATGATGGTCATGACGATTTAAACAATTCTAGCTGCGAAAACTCGTCTGTTTTCGGAGAAAGTGAAAGGGAAAGAGTGAGGCGAATATTCAGGGAATGGATGAATAATGGATCTAGGGATCGTGGATCAAACATTTCCCCAAGAAGTAACAGTCCAAGGGGAGAATGGCTTGGAGAAACCGAACAGGAAAGGGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAGTGTTTCTACTGCAGAAAACATGGAACAACCATGTGCTGAAATTGGTACACAAATCGAACGTGTGCGTGATGGATTAGTTGTTAACCACAGTGAGGGCCAAAATGAACATATAAGGAGGGGTATGCGGAAATTACGTGGCAAACAGGTTATGCTTGACATGCTTATGAAAGCTGAGAGGGAAAGGCAGAGAGAAATCCAGGAGTTGCTGGACCATCAGGCTGTATCACGTTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGATCTGTTGACCATAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGTTTATTGAGGCAAAGACAAACTGTATCAGGTCTAAGAGAAGGGTTCTTCTCTAGAATGGACAATACCAGTTGCAGTCAAGCAACCAGCAACCTATCCGATACCTCATCAAACACTGATATTGATTTTAGTACAAGTGAACAAACTGGAGAAAGCAGTTCATGTATGGTCATTGAACCTAATAACAGAAGTGATAATAGAGTTGGAATATCTGGTGGCCATTGTCTTGAAGGAACTACATGTGAGAGTTTAGATTGTCAAGAATCTACCTCCCATGCAGAAGGAAATCGGTTGCAGTGCTTGCAAATTGAATCAGTAGATAGTCAGTCATCATCCAGTGTTGGTTATGAAAGAAGAGATGAAACTGGGCAAAATGTTTATGTGATGGCAATCAGAGATACAGATAATGAACTTATCCAACACAGCTTACAAATTGGTGTTTCAGACCATAGTAATCATCAGGAATCCAGCGAGGTACCTAATGAGCAATCTGAGCTGGGTGGTGAAAATGATTCACCAAATCACAATGATTATGCGGAGAGCAATGTTGTCGATGATGTTAGTTATGGACCTGATGCTCTAGAAGAACTGCCAGAAGAAATTGTTGAAAATGAAGGAATTGGCTGGCATCAGAATAACACTGAATGGATAAATAGCACTGATGAAAATGCAGAGGATAATCAGCTCAGCAATACAGCAAATGAGTGGCCTGAAAACAGTTGGGCAAATGAGGATGGAGAAAACCCTCGCCTGCAAGAAGCTTCTGAAGTGTGGCAAGAGGACAGTGGCTTCCAAGAGGCCGTGGAAAATTGGTTGGGAGGACCTTCTAACCATGAAACTGCTCCAGGTGGTAGAGTTCGTAGTATTTATTTTCCTGATGATGACAATGTACACAGTGTTGAACTCAGGGAACTTCATAGTAGGAGACGTGTCTCTAATCTTCTCGGAAGTAGTTTCCGTGAGAATCTTGACCAATTGATACAATCATATGTCGAAAGACAAGGTCATGCTAACACGGAGTGGGATATGGAAGAAGCAAGCCCTTTTGCTGCCTCTGTAGAACAGAACCTCGAGCAGCAGAGTAGAGATCATATTGTTGATCAGGAGGGCACTATCAATAGTCCACTTGACTTGCCATCTTTGCCTAGACCTCCTACTCCGCCTCTATGGGATCAGCATCCTCATGGTGATAACTGGCCACAAAATGATGATTTGGAGATTATCAATGACTTGAGACTTGACATGGCTAGATTACAGCAAAGGATGAATACTATGCAGAAGATGCTCGAAGCATGTATGGATATGCAGCTTGAGCTTCAGCGCTCAATAAAACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGGAATACGTGACTGCGATTCACCAGATGATATTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGATAACAATATTGATTCTTTGTTGTACAGATGCGGGCACTTGTGCACATGCTCAACATGTGCCAATGAGTTGCTTCAGAATAGAAGGAATTGCCCAATGTGTCAAGCCCCTGTCGTGGAGGTCATACGTACTTATTCTATACTATAA 2520 0.4325 MAIAGLHSVSVLDSSFLRDSQSQASRRRGDGRRGSTRSSSLLQMWREIEDEHAVSHVQGRPGEVLLEQRNNGSVVDLSLEDTPDTPEIEERHDLEDAVLGETESETWSQSQSQTESHDGHDDLNNSSCENSSVFGESERERVRRIFREWMNNGSRDRGSNISPRSNSPRGEWLGETEQERVRVIREWVQMSSQQRSVSTAENMEQPCAEIGTQIERVRDGLVVNHSEGQNEHIRRGMRKLRGKQVMLDMLMKAERERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSVDHNRSTSVAESELGLLRQRQTVSGLREGFFSRMDNTSCSQATSNLSDTSSNTDIDFSTSEQTGESSSCMVIEPNNRSDNRVGISGGHCLEGTTCESLDCQESTSHAEGNRLQCLQIESVDSQSSSSVGYERRDETGQNVYVMAIRDTDNELIQHSLQIGVSDHSNHQESSEVPNEQSELGGENDSPNHNDYAESNVVDDVSYGPDALEELPEEIVENEGIGWHQNNTEWINSTDENAEDNQLSNTANEWPENSWANEDGENPRLQEASEVWQEDSGFQEAVENWLGGPSNHETAPGGRVRSIYFPDDDNVHSVELRELHSRRRVSNLLGSSFRENLDQLIQSYVERQGHANTEWDMEEASPFAASVEQNLEQQSRDHIVDQEGTINSPLDLPSLPRPPTPPLWDQHPHGDNWPQNDDLEIINDLRLDMARLQQRMNTMQKMLEACMDMQLELQRSIKQEVSAALNRSAGSSGIRDCDSPDDISKWECVRKGLCCICCDNNIDSLLYRCGHLCTCSTCANELLQNRRNCPMCQAPVVEVIRTYSIL* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1622 839 Coils Coil 250 270 - -
Tpr4g1622 839 MobiDBLite consensus disorder prediction 17 41 - -
Tpr4g1622 839 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 838 - -
Tpr4g1622 839 PANTHER PROTEIN, PUTATIVE-RELATED 1 838 - -
Tpr4g1622 839 Coils Coil 715 742 - -
Tpr4g1622 839 Pfam Zinc finger, C3HC4 type (RING finger) 784 831 - -
Tpr4g1622 839 CDD mRING-HC-C3HC5_NEU1 787 825 - -
Tpr4g1622 839 MobiDBLite consensus disorder prediction 455 477 - -
Tpr4g1622 839 MobiDBLite consensus disorder prediction 154 172 - -
Tpr4g1622 839 ProSiteProfiles Zinc finger RING-type profile. 787 826 IPR001841 -
Tpr4g1622 839 MobiDBLite consensus disorder prediction 154 173 - -
Tpr4g1622 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 837 IPR013083 -
Tpr4g1622 839 SUPERFAMILY RING/U-box 786 833 - -
Tpr4g1622 839 MobiDBLite consensus disorder prediction 99 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1622 Tpr-Chr4 16473364 16479041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1622 787 833 C3H Transcription Factor Family AT3G06140 40.426 6.72e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1622 - - gmx:100801329 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1622 4 16473364 16479041 Tpr4g1622 4 16473364 16479041 ECH
Tpr7g3743 7 46334510 46341078 Tpr4g1622 4 16473364 16479041 ECH
Tpr7g3743 7 46334510 46341078 Tpr4g1622 4 16473364 16479041 PCT