Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1617 ATGTCTCGTCGCGGTGGTGGAAACCCTTCCGATAACCGTCGTAACCAACCACAACCATCTCCGGCTACATCTCGTCTCAATGCTGCCGGAACAGGCCGTGGTGGTGGTGGTCGTGGATCTCGCGGTGGACATACCGTTCCATCTTCTTCATCGGTCCACGTACCTCCTCCGGCACCGATCAACACCGCTGCTTCATCTGTTGTAGCGCCGGTCGTTCATCCTGTTCATCCATCCGTTTCTGCTCCCGTTACCGGCTCTAGTTCGGCTCCGACTGTACCTTCTCCGGCTCCGGCGACGGTTTCCGCCGAAGCGCTGTCTACTGAAGTTCAACAGAAGCTTACTCTGCAATCGGCTTCCGCTCCGGCGTCTCAGAAGGCGATCAGGTTCCCTAATCGTCCTGGTTATGGTCAGTTAGGGAAAAAAGTGCAAGTTCGTGCTAATCATTTTCAGATGCAAGTTGCTGAGAGGGATCTGCATCACTACGATGTGTCGATTGCGCCGGAGATTCCTTCAAAAAAAGTGTCCAGAGACATTATCAATCAGTTGGTTAAGATGCATCGGGAGTCACTGTTAGAGAATCGCATTCCTGCTTATGATGGTAGGAAGAGCCTGTTTACTGCTGGACCATTACCGTTTACTTCTAAGGTTTTTGTGGTTAACTTGGTTGACGAGGATCGAGGATCCTCTTCTGGTTCTGATAGGAAAAAGCGTGAACGCGAGTTTAAGGTTACGATTCGGTTTGCTTCAAAGCCAGACATCGTCCATCTTAATCAGTTTCTCCGTCGTTTGCAGCCGGATTGTCCTTATGAAACCATACAAGTTCTTGATGTTGCTTTGCGGGCGACTCCAGCTGAAATGTACACTGTTGCAGGGAGGTCATTTTTCTCACCCAATTTGGGGGCACCTGGGCCTCTTGGCGGCGGGACAGAATTTTGGAGAGGCTTTTATCAAAGCCTTAGGCCAACACAAATGGGGCTCTCCCTCAACATTGATGTATCTTCGAGGGCCTTCTATGAACCGGTTCTTGTGACTGAATTTGTTTCTAAAAATTTTAAATTGAATTTTTCAAGGCAGCTGTCTGATCAAGACCGTCTCAAGATCAGAAGAGCCTTGAAAGGTCTTAAGGTACGGCTATCTCATGGGGCTGGAATGAGGAGTTGTAAGGTGACTGGTCTCTCAAAAGAGCCACTCAAAGACCTAACGTTCACACTTGAGGATAAAGTAACTAAGAAAAAAGTTCTGGATTATTTCCATGAGAAATACAATATTGAGTTGAAGTTTCCACTTCTTCCTGCTATCCAATCTGGAAGTGACGCAAGACCTATGTATTTTCCAATGGAGCTTTGCCGAATTGAGTCTGGACAGAGGTACTCCAAAAGATTGAATGAAGAGCAAGTAACCAATCTTTTAAGGGCTACCTGCCAGCGTCCTCATCAGAGAGAACAAGATATTAAAAATATCGTAAAGCAGCACCGCTTCAACTCAGACAAGGTTGTGAAGGAGTTTGGAATCAATGTAAGAGAGGATCTTGCTCTGGTTGATGCCCGTGTTTTGACACCCCCAACGCTCAAATATCATGGAACTGGTGGAGAATCAAAACTTGACCCTCGGATGGGTCAGTGGAATATGATTTCTAAGAAAATGGTTGATGGTGGCAAGGTTCAATTTTGGGGTTGCCTTTGCTTTGCAAAAATGGACCCAACTATGTTTTGCCAAGAGTTGGTTACTATGTGTCAAGCCAAGGGACTGGTTTTCAACCGAGATCCTGTGGTACCTCTTTCCCCAGGCAATCCTAATCAAATTGAGAGAGAGCTTGAGAATTTTAACAAGAAGTGCAAGGCAATACTTGAAAGCAAACAGCAGAGGCTTCAATTGCTGATAATAATTATGCCTGATTTCAAGGGTGTGAGAACTTATGATAAAATAAAGCGTGTCTGTGAAACTGAACTGGGAATTGTTTCTCAATGTTGTCAGCCAAGGCAAGCGCAAAAGTTGAATAAGCAGTATCTTGAAAATTTGGCTTTGAAGATTAATGTCAAGGTTGGTGGTCGTAACACTGTGCTGAATGATGCATTTGAGAGAAGAATTCCACTTGTAACTGATAGACCAACGATAATATTTGGTGCGGATGTAACACATCCACAGCCAGGGGAAGACTCAAGTCCTTCTATAGCTGCAGTGGTGGCATCCATGGATTGGCCTTGGGTCACCAAGTACAGGGGAGTTTATTCTGCCCAGTCTCATAGGGAAGAAATTATTCAGGATCTGTATAAAACTGTAGTGCATCCTCAAAGGGGGGTTGTACCTAGTGGAATGATAAGGGAGCTAATTGTGTCTTTCTATAAGGCAACTGGGCGTAAGCCTGAGAGGATTATATTTTACAGAGATGGAGTAAGTGAAGGGCAGTTTAGTCAGGTTTTGCTTTATGAGGTGGATGCAATCCGAAAGGCTTGTGCCTCGATAGAAAATGGGTATCTACCTCCAATTACTTTTGTGGTGGTCCAAAAGAGACATCATACCCGCCTCTTTCCTGTAAGAAGAGAAGAGACAGACAAAAGTGGAAATATAATGCCAGGAACTGTGGTAGACACCAACATTTGCCACCCCAGAGAATTTGATTTTTATCTCAACAGCCATGCTGGGATTCAGGGCACTAGTCGACCAGCTCATTATCATGTGTTGTTTGATGAAAATCGCTTCAGTGCAGATCACTTACAGAGTTTGACCAATAACTTGTGTTACACTTATGCTAGGTGTACTCGATCAGTGTCAATAGTTCCTCCTGCTTATTATGCACACTTGTTAGCTTTCCGAACTCGCTACTACCTCAGTGACGCTGCTGACACTTCTGATTCTGATTCTGCAAATGGCGGTACTAGGAATGCCACCAATGTGGTGGCGGCACTTCCCTCCATCATTGAAAGCGTCAAAGATAACATGTTTTATGTTTAA 2952 0.4509 MSRRGGGNPSDNRRNQPQPSPATSRLNAAGTGRGGGGRGSRGGHTVPSSSSVHVPPPAPINTAASSVVAPVVHPVHPSVSAPVTGSSSAPTVPSPAPATVSAEALSTEVQQKLTLQSASAPASQKAIRFPNRPGYGQLGKKVQVRANHFQMQVAERDLHHYDVSIAPEIPSKKVSRDIINQLVKMHRESLLENRIPAYDGRKSLFTAGPLPFTSKVFVVNLVDEDRGSSSGSDRKKREREFKVTIRFASKPDIVHLNQFLRRLQPDCPYETIQVLDVALRATPAEMYTVAGRSFFSPNLGAPGPLGGGTEFWRGFYQSLRPTQMGLSLNIDVSSRAFYEPVLVTEFVSKNFKLNFSRQLSDQDRLKIRRALKGLKVRLSHGAGMRSCKVTGLSKEPLKDLTFTLEDKVTKKKVLDYFHEKYNIELKFPLLPAIQSGSDARPMYFPMELCRIESGQRYSKRLNEEQVTNLLRATCQRPHQREQDIKNIVKQHRFNSDKVVKEFGINVREDLALVDARVLTPPTLKYHGTGGESKLDPRMGQWNMISKKMVDGGKVQFWGCLCFAKMDPTMFCQELVTMCQAKGLVFNRDPVVPLSPGNPNQIERELENFNKKCKAILESKQQRLQLLIIIMPDFKGVRTYDKIKRVCETELGIVSQCCQPRQAQKLNKQYLENLALKINVKVGGRNTVLNDAFERRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYRGVYSAQSHREEIIQDLYKTVVHPQRGVVPSGMIRELIVSFYKATGRKPERIIFYRDGVSEGQFSQVLLYEVDAIRKACASIENGYLPPITFVVVQKRHHTRLFPVRREETDKSGNIMPGTVVDTNICHPREFDFYLNSHAGIQGTSRPAHYHVLFDENRFSADHLQSLTNNLCYTYARCTRSVSIVPPAYYAHLLAFRTRYYLSDAADTSDSDSANGGTRNATNVVAALPSIIESVKDNMFYV* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1617 983 Pfam Piwi domain 626 942 IPR003165 GO:0003676
Tpr4g1617 983 Gene3D - 517 690 - -
Tpr4g1617 983 ProSiteProfiles PAZ domain profile. 341 453 IPR003100 GO:0005515
Tpr4g1617 983 Pfam N-terminal domain of argonaute 140 279 IPR032474 -
Tpr4g1617 983 Gene3D - 696 983 IPR036397 GO:0003676
Tpr4g1617 983 Pfam Argonaute linker 1 domain 291 339 IPR014811 -
Tpr4g1617 983 Gene3D paz domain 335 457 - -
Tpr4g1617 983 CDD Piwi_ago-like 497 943 IPR045246 -
Tpr4g1617 983 SMART PAZ_2_a_3 341 472 IPR003100 GO:0005515
Tpr4g1617 983 SMART Piwi_a_2 625 944 IPR003165 GO:0003676
Tpr4g1617 983 ProSiteProfiles Piwi domain profile. 625 944 IPR003165 GO:0003676
Tpr4g1617 983 Pfam Argonaute linker 2 domain 479 525 IPR032472 -
Tpr4g1617 983 SUPERFAMILY Ribonuclease H-like 614 945 IPR012337 -
Tpr4g1617 983 MobiDBLite consensus disorder prediction 1 27 - -
Tpr4g1617 983 MobiDBLite consensus disorder prediction 1 54 - -
Tpr4g1617 983 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 963 - -
Tpr4g1617 983 Pfam PAZ domain 362 470 IPR003100 GO:0005515
Tpr4g1617 983 PANTHER ARGONAUTE1 33 963 - -
Tpr4g1617 983 SUPERFAMILY PAZ domain 336 493 IPR036085 GO:0005515
Tpr4g1617 983 CDD PAZ_argonaute_like 343 451 - -
Tpr4g1617 983 SMART DUF1785_2 288 340 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1617 Tpr-Chr4 16355386 16361889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1617 74 982 Eukaryotic Initiation Factors Gene Family AT1G48410 55.198 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1617 K11593 - gmx:100799033 1199.88