Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1602 ATGGAAAAAACTAATGGTAGATCGAGAGGTCGTCCTAAGAAACGAAGAAAGGAGGACGAAAAGGACGTAAAATCGGTTGCTGATGCCAAACGGCCTCCGTTGGAGGCCAAACCAATAGCATTGGTTGGCAGATACGTGCTGAAGGAGTTCCCAGAAAATGGGATTTTTCTGGGGAAAGTTGTCTACTATGACAGTGGATTGTATAGAGTGAATTATGAAGATGGCGATTTTGAAGATTTAGAGAGTGTAGAAATCCGTCCCATACTTATTGGCGACGATGCTTTTGATGCTGGTTTGGTTAAGAGGAGGACCAAATTAGAGAAGTTAGTGGCGAGGAATAGCGCCAAGGTTGCGGACGTAACTGAAAAGGATTCAGTTAAAGCTGCTGGCAAAGAGGAATCTGCAGTTGGTGTAGCTTCTTCTGGTGAATTGAATGGCGGGCCATCATTGGAGAATGATGATGATGAAGATGATGGAGCAGACGCTGATGTGGCAAGCGAGTCTGTTTCTGATGTCGAGACACTGCCTTTGCCGCCACCATTACAGTTGCCGTCATCATCGGGAACTATTGGTGTGCCGGAGCCAAGTGTCTCCCATCTTTTCTCTATCTACGGATTCTTGAGATCCTTCAGCACTCAATTATTTCTTCATCCCTTTACTTTGGATGAATTTGTTGGTGCTCTGAATTCTCAAGTCTCCAACACGTTATTTGATGCCATTCATTTTTCCCTAATGCGGGTGTTAAGGCATAATCTTGAGACACTGTCAGCTGAGGGATCTGAGCTTGCATCGCATTGCCTTCGGTGCAACGATTGGAACTTGCTTGATACGTTGACTTGGTCTGTTTTTGTGGTTTTGTATTTGGTGGTTAAAGGATACACCAAAGGACCCGAATGGAAGGGATTTTATGATGAGGTTTTTAGTACTGACTATTATTTGTTGCCTGTAAGTAGGAAGTTAATGATACTGCAAATTCTTTGTGACGATGTTTTGGAATCTGAGGAGCTAAAAACTGAAATGAACATGCGAAAGGAATCAGAGGTCGGTGTGGATTATGATGCAGAAGATATCCTTCCTGCAGAAATGGGACCGAGAAAAGTTCATCCAAGATATACCAGGACCTCTTTTTGTGAGGATAAAGAAGCTATCAAATTGGTTTCAGAAAGCACCGAGGATGGGGATTTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGAACCCTTCTTTGTTGTGATGGGTGTCCCTCTTCTTACCATTCAAGGTGTATTGGTGTGATGAAAAGTTTTATACCAGAAGGGCCATGGTATTGTCCAGAATGCAAAATCAATATGACTGGGCCCACAATTGCAAAGGGAACCTCACTTAGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAGCTCTTCATGGGTACATGCGACCACTTGCTTGTGCTGAACATTGGCAACAATGAAGTTTGTCTTAGATATTACAATCAGAAGGACATTCCTAAAGTTGTCCAACTGCTTTATGAATCCACGCTGCATAGGCCAATGTACTATGGTATTTGCATGGCAGTGCTACAATACTGGAATATTTCCGAAAACTTCTTGCCTCTTCCTGCTTCAACTGAAACAAATATGAAGGATGAGACAGAATTTTATGCCCCTTTACTTCCTCCTCCAAGTGAAGACAACCATAAACCCGTTAGTTTGGTCAAGGGAGAGAATTCTCCAACCACTGCGAGTTTGATTCACAATGATAATAGGGTGCCTTCTCTTGATGCTTTGCAAGTTAGCACTCAAAGTTCTGCTCTTCATAGCAATGGCATTGCTAGGAGTGAAGAGGGCCTTACTGTGGTTAATAACATTGCTGCGGAAACTAGGATAGAGGCAATAACTTCAGCTGGTTCTGTTAGCCATCAGTCGGACACGAACTTGCAGAACTCTGTCAATATGTCAACTACAGTAGATGCTGTTAATTGCTCTTTGGTGAAAAGTCAATTAAGTCATTGCGGCCATGCAAATGATATGGGGTTGCCTTTGAATTTTTCTTTGCTAAACAAAGAAAATGCCCCAGTAGGCTTTGGGAAGTATGAAAGCAATGTAAATGATGATTTTTGTTACTTTGGTTTCTCCTATAAACCCACATCATACATAAACTGCTATATGCATGGTGACTTTTCCGCATCAGCAGCTGCCAAATTTGCCATGATTTCTTCAGAGGAGTCTAAGTCAGAAGGTCATGCATCAGACAGCAATAAAAAAACGATATCTGCCTATACTTACTTGCAAGCAAAAGCATTCTCACTAGCAGCATCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCCGTGGAGGTTCCAAGAGAAAGGTGTGGTTGGTGCCTTTCCTGTAAAGCCAATGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTTATAAGTGCCACAAAAAGTGCCATGAGAATCCTTGCTAAATTTTCTCCTTTAAGGAGTGGAGATGGAAGTTTTCCTAGCACCATTGCAACTTACATTTTATATATGGAGAAATGTTTACATGGTTTAGTCGTTGGGCCCTTCATAAATGCAAGCTATAGAAACAACTGGCGTAAGCAAGTGGAACAGGCCACAACACTTGGTGCTCTCAAACCACTTCTACTTAATCTTGAGGAGAACATTAGAACCATTGCTTTTTGTGGGGACTGGGCTAAGCTGATGGATGATCGGTTGGTTGAGTTTTCCATAATACAAAGTGCCACATCTACTCAAGGAACAACTCAGAAACGTGCACCAAGTGGGAGGCGTAATAAAAAGAGATCATCGATTGATGAAGCTATAGATGATAGTTCCCAGGAAGGCATGTGGTGGCGCGGTGGCAAAGTTACCAAATTTATATTTCAGAATGTAGCTTTGCCGAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTCGAGGAAAATTTCGGGTATTGTCTATGCCGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGTCGCAGTTCAAATGAGTAGAAATGCCTCACAGCTGGCACTCCAGGTCAGATACCTAGATTCTTATCTTAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATACAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCCGAAATGCGAACATTTGTGATAAAAAATTTGTTAATGGAAAAATTTGTTATGGAATAGCTTTTGGTAGCCAAAAGCATCTTCCTAATAGGGTGATGAAAAGTGTTATTGAAAAAGAGCAAATTTCAGAAGGAAAAGAAAAGTATTGGTTTTCTGAAACTAGAATTCCTTTATATTTGATAAAAGAGTATGAAGAAGGTAATGAAAAGGTTCCATGTGAAGAGCACTATAGTGGTGCATCTCAGTTGAACAGAAGGCGGTTGAAAGGTACCTGCGACGACATACTCTTTTACCTCACTTGCAAGAGAGACAACTTGGCATTCTCGTGTTCTTCATGTCAGATGGGAATTTCAATTCGGAATGCTCACAAGTGTAATGCATGTCAAGGTTATTGTCATGAGGACTGTTCCATAAGTTCAGTTTCTATACTCTCTACAAATGGGGAAGTTGAGCGCTTGACCACATGCAAACAATGTCACCGTGCCAAGTTACTTGCTCCAAACGTAATTAGTGATGAATCTCCAACCAGTCCTTTAATCTTACAAGGACAGGAAAACAGCTCTGGGACTATTTTCAAAGGACCAAGGCCAAAGGCTGGTCATTCTGACACGAAACAAGTTAATTCTGTTTCAGTTTCAAAAGGATCGAAGCGTAAATGTCCTGATCAAACTTTGAGTTCTAGCAGGAAAAAAAAATGTCATCCTGATACCAAACAAGCTGCGTCTGGTTCCACTTTGGTGGAATCAAGCAACCGTCGCAACAATAATTTTAGTTGGGGTCTTATATGGAAAAGGAAAAGTAATGAAGAAAACAATGATTTTAGGATAAAAAACATACTTTTAAAGGGAGGATCAAACATGCCTGATCTATCTCCTGTTTGTAAGTTATGTAAAAAGGCATATAGGTCAGATCTAATGTATATCCGCTGCGAGACATGCCAAAATTGGTTTCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCGACTTTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCGTACTTTGAACCAGAACCTACGTCAGAAGTTAAGAAATCACGCAGAAGAGCTTCAAAGAAAGAACAGTCTGGAGGCAATTCTGATTCCGGAACATTCAATGATATCAGAGATTCTGAACCTGCTACTCCTGTCTTTCCTGTGGAGAGTGATCCTTTACTTTTTTCTCTTTCAAATGTTGAGCTCATTACAGAATCTAATAAATTAGATTTGGATGTTCAGTGGAACACTGCCTCTGTGCCAGTGCCTCAGAAATTGCCAGTTAGAAGGCATGTTAAGCATGAGGGGGATGATGATGGTTCTGTTGCAGGAATTCCTTTACATGCTGATTTTTCAACACACAGTGAAGCAGGTTATCTGCCCAATCCTGCAGATTCGGAACTACCTTTAGAATACGACTCTGCTGTTTTCGACAGCAATCTGCCGAACAACTATGAGTTTGGGAATGATCAATCTTTTGATTACAATTACAATAACAATTACAATCCTAATCTCTATTTCGATCCAAATGAACTGCTATGCACAGATGAAGGCCAGATTGATGAAGGCCAGATTGATGGAGGCCAGATTGATGGAAGCCAGATTGATGGAGGCCAGATTGATGGAATCCAGATTGATGGAGGCCAGATTGATGGAAGCCAGATTGATGGAGGCCAGATTGATGGAATCCAGATTGATGGAGGCCAGATTGATGGAATCCAGATTGATGGAGGCCAGATTGATGGAAGCCAGATTGATGGAGGTCGGATTGATGGAAGTGATTTGTCTATGGATTTGTTGAAATATGATTTTGAGGATTCTGGTGTCGCTGTTCCTGAAGAATTTGGAGAATTTGGAGATTTTGGAGAATTTGAAGAGAACATTTATTGCAATATATGTTTACAAAATGCACCAGATCTTGATCGTTTTTGTGAGACATGTGGGGTTTTGTGTCACAGCAGTTGTATGCCTTGGCCTGAATCAGTTTATGATGGTGAAAAGTGGAAGTGTATGAATTGCCGGGATTGGCAATAA 5223 0.4147 MEKTNGRSRGRPKKRRKEDEKDVKSVADAKRPPLEAKPIALVGRYVLKEFPENGIFLGKVVYYDSGLYRVNYEDGDFEDLESVEIRPILIGDDAFDAGLVKRRTKLEKLVARNSAKVADVTEKDSVKAAGKEESAVGVASSGELNGGPSLENDDDEDDGADADVASESVSDVETLPLPPPLQLPSSSGTIGVPEPSVSHLFSIYGFLRSFSTQLFLHPFTLDEFVGALNSQVSNTLFDAIHFSLMRVLRHNLETLSAEGSELASHCLRCNDWNLLDTLTWSVFVVLYLVVKGYTKGPEWKGFYDEVFSTDYYLLPVSRKLMILQILCDDVLESEELKTEMNMRKESEVGVDYDAEDILPAEMGPRKVHPRYTRTSFCEDKEAIKLVSESTEDGDFDRNGDECRLCGMDGTLLCCDGCPSSYHSRCIGVMKSFIPEGPWYCPECKINMTGPTIAKGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNIGNNEVCLRYYNQKDIPKVVQLLYESTLHRPMYYGICMAVLQYWNISENFLPLPASTETNMKDETEFYAPLLPPPSEDNHKPVSLVKGENSPTTASLIHNDNRVPSLDALQVSTQSSALHSNGIARSEEGLTVVNNIAAETRIEAITSAGSVSHQSDTNLQNSVNMSTTVDAVNCSLVKSQLSHCGHANDMGLPLNFSLLNKENAPVGFGKYESNVNDDFCYFGFSYKPTSYINCYMHGDFSASAAAKFAMISSEESKSEGHASDSNKKTISAYTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCLSCKANVASKRGCMLNHALISATKSAMRILAKFSPLRSGDGSFPSTIATYILYMEKCLHGLVVGPFINASYRNNWRKQVEQATTLGALKPLLLNLEENIRTIAFCGDWAKLMDDRLVEFSIIQSATSTQGTTQKRAPSGRRNKKRSSIDEAIDDSSQEGMWWRGGKVTKFIFQNVALPKSMVRKAARQGGSRKISGIVYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDSYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDKKFVNGKICYGIAFGSQKHLPNRVMKSVIEKEQISEGKEKYWFSETRIPLYLIKEYEEGNEKVPCEEHYSGASQLNRRRLKGTCDDILFYLTCKRDNLAFSCSSCQMGISIRNAHKCNACQGYCHEDCSISSVSILSTNGEVERLTTCKQCHRAKLLAPNVISDESPTSPLILQGQENSSGTIFKGPRPKAGHSDTKQVNSVSVSKGSKRKCPDQTLSSSRKKKCHPDTKQAASGSTLVESSNRRNNNFSWGLIWKRKSNEENNDFRIKNILLKGGSNMPDLSPVCKLCKKAYRSDLMYIRCETCQNWFHAEAVELEESKISTLLGFKCCKCRRIKSPVCPYFEPEPTSEVKKSRRRASKKEQSGGNSDSGTFNDIRDSEPATPVFPVESDPLLFSLSNVELITESNKLDLDVQWNTASVPVPQKLPVRRHVKHEGDDDGSVAGIPLHADFSTHSEAGYLPNPADSELPLEYDSAVFDSNLPNNYEFGNDQSFDYNYNNNYNPNLYFDPNELLCTDEGQIDEGQIDGGQIDGSQIDGGQIDGIQIDGGQIDGSQIDGGQIDGIQIDGGQIDGIQIDGGQIDGSQIDGGRIDGSDLSMDLLKYDFEDSGVAVPEEFGEFGDFGEFEENIYCNICLQNAPDLDRFCETCGVLCHSSCMPWPESVYDGEKWKCMNCRDWQ* 1741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1602 1740 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1689 1737 - -
Tpr4g1602 1740 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1583 - -
Tpr4g1602 1740 CDD PHD_SF 1692 1736 - -
Tpr4g1602 1740 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 308 341 IPR028942 -
Tpr4g1602 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 448 IPR013083 -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 1278 1292 - -
Tpr4g1602 1740 Gene3D Insect antifreeze protein 1573 1675 - -
Tpr4g1602 1740 Pfam PHD-finger 402 444 IPR019787 -
Tpr4g1602 1740 Pfam DDT domain 196 250 IPR018501 -
Tpr4g1602 1740 SUPERFAMILY FYVE/PHD zinc finger 388 449 IPR011011 -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 921 945 - -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 131 161 - -
Tpr4g1602 1740 ProSiteProfiles DDT domain profile. 194 254 IPR018501 -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 1257 1277 - -
Tpr4g1602 1740 ProSiteProfiles Zinc finger PHD-type profile. 399 446 IPR019787 -
Tpr4g1602 1740 SUPERFAMILY FYVE/PHD zinc finger 1344 1402 IPR011011 -
Tpr4g1602 1740 SUPERFAMILY FYVE/PHD zinc finger 1686 1737 IPR011011 -
Tpr4g1602 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1343 1402 IPR013083 -
Tpr4g1602 1740 SMART PHD_3 401 444 IPR001965 -
Tpr4g1602 1740 SMART PHD_3 1348 1396 IPR001965 -
Tpr4g1602 1740 SMART PHD_3 1164 1215 IPR001965 -
Tpr4g1602 1740 SMART PHD_3 1692 1737 IPR001965 -
Tpr4g1602 1740 ProSitePatterns Zinc finger PHD-type signature. 402 443 IPR019786 -
Tpr4g1602 1740 CDD PHD2_CHD_II 402 443 - -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 1250 1304 - -
Tpr4g1602 1740 PANTHER PHD FINGER FAMILY PROTEIN 1689 1737 - -
Tpr4g1602 1740 PANTHER PHD FINGER FAMILY PROTEIN 1 1583 - -
Tpr4g1602 1740 SMART testlast3 194 254 IPR018501 -
Tpr4g1602 1740 CDD PHD_SF 1348 1395 - -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 1414 1438 - -
Tpr4g1602 1740 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1602 Tpr-Chr4 16084340 16092896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1602 287 545 EF-hand Containing Proteins AT5G22760 47.518 1.58e-72 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tpr4g1602 DDT 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1602 - - mtr:MTR_4g055920 2125.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1602 4 16084340 16092896 Tpr4g1602 4 16084340 16092896 ECH
Tpr7g3805 7 47122917 47130434 Tpr4g1602 4 16084340 16092896 PCT