Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1599 ATGGAAGATCAAAACCTGAACCTACCTGCTGCCATGTCACCAAGTTCAACCCATGACGGGTCAGAAACCAACAACAACAACAACCCTGTTACAACTGAAGTTGCTAGAGTTGTTGATGTTGGTTCAGACACCGGAGCACAGTCTGAACCTGTAGGTTCAAACTTTCCTCCGGTGAAAAGGGGGCGTGGAAGACCTCGGAAGGTTCGTGAGAACCAACCGTCTCCAGTACCTGTGACACCAGTACCGGAGCTTGTTATTCAGCCTTTTGGAAGTGAGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTACTGGAAAACTTCAGATTTTAGCTTCAATTGGTGGGTTTGTTGCTGAAACAGCTGGAGGAAGTATCACACCTCATGTGCTGACTGTTAACCCGGGAGAGGACGTGGTTGCAAAAATATTTACATTTTTTCAAAATGCTCCTCGAGTTGCTACTTGTGTACTCTCTGCTGCTGGCACTGTATCAAGTGTTGTCCTTCGCCAACCTAATGTTTCTGGTGGTTTTTTAAGATATGAGGGTCAGTTTGATATTTTATCATTGCGTGGATCATGCACCTTCACTACTGGTGCTGCTGCTGGTGGTACACAGAGAAAAATTAGCATGCTGAGTGTTTCATTATCTAAATCTGATGGAAGAATTTTCGGAGGTGTTATCGAGAACTCAATGATAGCTGCTACTCCTATTCCGCTGATTATGGCAACTTTCAAGCAAAACATAAGTAGCCAAATCAAGAGAAAATGCTCATCTCCACCGTCAACTGCTCCTAACATGCTGCCTAACTTGAAAGTTCCCAAGTTAACTGTAGAACAAGGAGAACCTAGCTACCAAACTGGAAATGCAACAGCAAATTCTAATGGTGTAGCAGTAGCAGATATGAACGTGGTAGCAGCTGAAACAACTAATGCTGTGTCAGTGTCAGAAAATGTCACTACTTATGCTGATGAAAATGTTCATTCTGATTCTGTTGGAGGTGGTGGTGGTCTTGGTATTGACCTTGAGAGTCAAGAGCCTGAAACAGACCATAAAACATCTCCTTAA 1062 0.4416 MEDQNLNLPAAMSPSSTHDGSETNNNNNPVTTEVARVVDVGSDTGAQSEPVGSNFPPVKRGRGRPRKVRENQPSPVPVTPVPELVIQPFGSEEKRGRGRPRGTGKLQILASIGGFVAETAGGSITPHVLTVNPGEDVVAKIFTFFQNAPRVATCVLSAAGTVSSVVLRQPNVSGGFLRYEGQFDILSLRGSCTFTTGAAAGGTQRKISMLSVSLSKSDGRIFGGVIENSMIAATPIPLIMATFKQNISSQIKRKCSSPPSTAPNMLPNLKVPKLTVEQGEPSYQTGNATANSNGVAVADMNVVAAETTNAVSVSENVTTYADENVHSDSVGGGGGLGIDLESQEPETDHKTSP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1599 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 247 - -
Tpr4g1599 353 ProSiteProfiles PPC domain profile profile. 121 269 IPR005175 -
Tpr4g1599 353 CDD DUF296 125 243 IPR005175 -
Tpr4g1599 353 PANTHER DUF296 DOMAIN PROTEIN 1 335 - -
Tpr4g1599 353 SMART AT_hook_2 59 71 IPR017956 GO:0003677
Tpr4g1599 353 SMART AT_hook_2 94 106 IPR017956 GO:0003677
Tpr4g1599 353 PRINTS AT-hook-like domain signature 59 69 IPR017956 GO:0003677
Tpr4g1599 353 PRINTS AT-hook-like domain signature 92 103 IPR017956 GO:0003677
Tpr4g1599 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 335 IPR039605 GO:0003680
Tpr4g1599 353 MobiDBLite consensus disorder prediction 1 33 - -
Tpr4g1599 353 MobiDBLite consensus disorder prediction 322 353 - -
Tpr4g1599 353 MobiDBLite consensus disorder prediction 1 82 - -
Tpr4g1599 353 Gene3D - 126 262 - -
Tpr4g1599 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 244 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1599 Tpr-Chr4 16051599 16055907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1599 57 243 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 43.316 2.70e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1599 - - mtr:MTR_4g055833 339.732