Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1580 ATGACGACGGAGAACACCGTAACTGAAAACCCTAGCCATGAACAACGACCAAAAGTGGTGGTTATAACAGGCCCAACCGGTTCCGGAAAATCAAAGCTAGCCGTTGATTTGGCCTCACACTTTCCAATCGAAGTAATCAACGCCGATTCCATGCAAGTCTACAGTGGCCTCGATATTCTCACCAATAAACTCCCCTTCTCTGAACAAAACGGAGTGCCGCATCATCTATTGGGTACTGTAAACCCTAATTTTGAATTCACTGCCAAAGCTTTTCGTGATTCTGCTATCCCCATCATTGATGACATATTGTCTAGGAACAACTTACCTGTTATTGTTGGTGGTACTAATTACTATATACAGGCTCTTGTGAGTTCGTTTCTGTTAGATGATTCAACAGATGATTTGAACGAAAGCTATTTGGGTGACTCACCTGGTATCACAGGGTATGATAATGATGTGTGTTCTGAAAATGACAGTTCAAGCAACAGTTACGATTTTCTTAAAGATATTGATCCAGTTGCAGCGAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATACATTAGTTTGTACTCTCGAACTGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCAGCAGAGAAGTGGGGTCAAGCTGATGACTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCATCTCTCCCGGTACTGGACAGATATGTAGAGCAGAGGGTAGATGATATGATGGATGCAGGGTTACTCAATGAAGTCTATGACATTTATAGTATGAATGCAGATTATACCAGAGGTTTGCGACAGGCCATTGGTGTCCGTGAATTTGAGGATCTTCTACGGACTAGTGTTTTCAAAAACATAAATCAGAAAGAGGTGGAATTAATTGACAGATCAAACTTAGAAAATAGTGAGCCATTGTTTCATGGCAATTTGCTGGTGTGGTTGAGATCTTCCTCTGATACTAAATCCACAACTCTTTTGGAAGAAGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTCCGCCGTCAGAAGAGGATGTTCACTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACAGAATCAATATTGAGCAGATCAAATGATGTATGGAATAGCCAAGTGGTTGAATCTGCCACGAAGATAGTGTCATCTTTCCTAAGTGAGAATCGTAGCTTGTCGTCGTCAAATGGCAATCGGACGAAAATAATCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCCTGCAATGACCGGGTTCTGAGAGGGTTACATGAATGGGAACAACACATACGTGGGCGTGGGCACCGTAAACGTATTTCTAGTCTCAAGAGCAAGGCAAAAGGTCTTAGTTTTGTGGAACATACTCATGAATCTTCTGAGAATCGAGCATAG 1422 0.4142 MTTENTVTENPSHEQRPKVVVITGPTGSGKSKLAVDLASHFPIEVINADSMQVYSGLDILTNKLPFSEQNGVPHHLLGTVNPNFEFTAKAFRDSAIPIIDDILSRNNLPVIVGGTNYYIQALVSSFLLDDSTDDLNESYLGDSPGITGYDNDVCSENDSSSNSYDFLKDIDPVAANRIHPNNHRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADDLRYDCCFISVDASLPVLDRYVEQRVDDMMDAGLLNEVYDIYSMNADYTRGLRQAIGVREFEDLLRTSVFKNINQKEVELIDRSNLENSEPLFHGNLLVWLRSSSDTKSTTLLEEAIEKVKVNTRRLVRRQKRMFTRLQTLFGWDIHYVDSTESILSRSNDVWNSQVVESATKIVSSFLSENRSLSSSNGNRTKIIQRDLWTQYTCKACNDRVLRGLHEWEQHIRGRGHRKRISSLKSKAKGLSFVEHTHESSENRA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1580 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 399 - -
Tpr4g1580 473 Gene3D Classic Zinc Finger 418 460 - -
Tpr4g1580 473 TIGRFAM miaA: tRNA dimethylallyltransferase 19 283 IPR018022 GO:0008033
Tpr4g1580 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
Tpr4g1580 473 Gene3D - 153 208 - -
Tpr4g1580 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 399 IPR039657 -
Tpr4g1580 473 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Tpr4g1580 473 Gene3D - 17 417 IPR027417 -
Tpr4g1580 473 Pfam IPP transferase 52 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1580 Tpr-Chr4 15794928 15799682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1580 22 454 C2H2 Transcription Factor Family AT2G27760 57.208 1.56e-173 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1580 K00791 - gmx:100792690 686.797