Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1573 ATGGAAGATCAAAACCTGAACCTACCTGCTGCCATGTCACCAAGTTCAACCCATGACGGGTCAGAAACCATCAACAACAACAACAACAACCCTGTTACAACTGAAGTTGCTAGAGTTGTTGATGTTGGTTCAGACACCGGAGCACAGTCTGAACCTGTAGGTTCAAACTTTCCTCCGGTGAAAAGGGGGCGTGGAAGACCTCGGAAGGTTCGTGAGAACCAACCGTCTCCAGTACCAGTGACACCAGTACCGGAGCTTGTTATTCAGCCTTTTGGAAGTGAGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTACTGGAAAACTTCAGATTTTAGCTTCAATTGGTGGGTTTGTTGCTGAAACAGCTGGAGGAAGTATCACACCTCATGTGCTGACTGTTAACCCGGGAGAGGACGTGGTTGCAAAAATATTTACATTTTTTCAAAATGCTCCTCGAGTTGCTACTTGTGTACTCTCTGCTGCTGGCACTGTATCAAGTGTTGTCCTTCGCCAACCTAATGTTTCTGGTGGTTTTTTAAGATATGAGGGTCAGTTTGATATTTTATCATTGCGTGGATCATGCACCTTCACTACTGGTGCTGCTGCTGGTGGTACACAGAGAAAAATTAGCATGCTGAGTGTTTCATTATCTAAATCTGATGGAAGAATTTTCGGAGGTGTTATCGAGAACTCAATGATAGCTGCTACTCCTATTCCGCTGATTATGGCAACTTTCAAGCAAAACATAAGTAGCCAAATCAAGAGAAAATGCTCATCTCCACCGTCAACTGCTCCTAACATGCTGCCTAACTTGAAAGTTCCCAAGTTAACTGTAGAACAAGGAGAACCTAGCTACCAAACTGGAAATGCAACAGCAAATTCTAATGGTGTAGCAGTAGCAGATATGAACGTGGTAGCAGCTGAAACAACTAATGCTGTGTCAGTGTCAGAAAATGTCACTACTTATGCTGATGAAAATGTTCATTCTGATTCTGTTGGAGGTGGTGGTGGTCTTGGTATTGACCTTGAGAGTCAAGAGCCTGAAACAGACCATAAAACATCTCCTTAA 1068 0.441 MEDQNLNLPAAMSPSSTHDGSETINNNNNNPVTTEVARVVDVGSDTGAQSEPVGSNFPPVKRGRGRPRKVRENQPSPVPVTPVPELVIQPFGSEEKRGRGRPRGTGKLQILASIGGFVAETAGGSITPHVLTVNPGEDVVAKIFTFFQNAPRVATCVLSAAGTVSSVVLRQPNVSGGFLRYEGQFDILSLRGSCTFTTGAAAGGTQRKISMLSVSLSKSDGRIFGGVIENSMIAATPIPLIMATFKQNISSQIKRKCSSPPSTAPNMLPNLKVPKLTVEQGEPSYQTGNATANSNGVAVADMNVVAAETTNAVSVSENVTTYADENVHSDSVGGGGGLGIDLESQEPETDHKTSP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1573 355 MobiDBLite consensus disorder prediction 1 35 - -
Tpr4g1573 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 249 - -
Tpr4g1573 355 CDD DUF296 127 245 IPR005175 -
Tpr4g1573 355 PRINTS AT-hook-like domain signature 61 71 IPR017956 GO:0003677
Tpr4g1573 355 PRINTS AT-hook-like domain signature 94 105 IPR017956 GO:0003677
Tpr4g1573 355 ProSiteProfiles PPC domain profile profile. 123 271 IPR005175 -
Tpr4g1573 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 246 IPR005175 -
Tpr4g1573 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 337 IPR039605 GO:0003680
Tpr4g1573 355 Gene3D - 128 264 - -
Tpr4g1573 355 PANTHER DUF296 DOMAIN PROTEIN 1 337 - -
Tpr4g1573 355 MobiDBLite consensus disorder prediction 324 355 - -
Tpr4g1573 355 SMART AT_hook_2 61 73 IPR017956 GO:0003677
Tpr4g1573 355 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Tpr4g1573 355 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1573 Tpr-Chr4 15718941 15723272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1573 59 245 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 43.316 2.98e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1573 - - mtr:MTR_4g055833 343.199