Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1555 ATGACGACGGAGAACACCGTAACTGAAAACCCTAGCCATGAACAACGACCAAAAGTGGTGGTTATAACAGGCCCAACCGGTTCCGGAAAATCAAAGCTAGCCGTTGATTTGGCCTCACACTTTCCAATCGAAGTAATCAACGCCGATTCCATGCAAGTCTACAGTGGCCTCGATATTCTCACCAATAAACTCCCCTTCTCTGAACAAAACGGAGTGCCGCATCATCTATTGGGTACTGTAAACCCTAATTTTGAATTCACTGCCAAAGCTTTTCGTGATTCTGCTATCCCCATCATTGATGACATATTGTCTAGGAACAACTTACCTGTTATTGTTGGTGGTACTAATTACTATATACAGGCTCTTGTGAGTTCGTTTCTGTTAGATGATTCAACAGATGATTTGAACGAAAGCTATTTGGGTGACTCACCTGGTATCACAGGGTATGATAATGATGTGTGTTCTGAAAATGACAGTTCAAGCAACAGTTATGATTTTCTTAAAGATATTGATCCAGTTGCAGCGAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATACATTAGTTTGTACTCTCGAACTGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCAGCAGAGAAGTGGGGTCAAGCTGATGACTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCATCTCTCCCGGTACTGGACAGATATGTAGAGCAGAGGGTAGATGATATGATGGATGCAGGGTTACTCAATGAAGTCTATGACATTTATAGTATGAATGCAGATTATACCAGAGGTTTGCGACAGGCCATTGGTGTCCGTGAATTTGAGGATCTTCTACGGACTAGTGTTTTCAAAAACATAAATCAGAAAGAGGTGGAATTAATTGACAGATCAAACTTAGAAAATAGCGAGCCATTGTTTCATGGCAATTTGCTGGTGTGGTTGAGATCTTCCTCTGATACTAAATCCACAACTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTCAATACCAGGAGACTTGTCCGCCGTCAGAAGAGGATGCTCACTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACAGAATCAATATTGAGCAGATCAAATGATGTATGGAATAGCCAAGTGGTTGAATCTGCCACGAAGATAGTGTCATCTTTCCTAAGTGAGAATCGTAGCTTGTCGTCGTCAAATGGCAATCGGACGAAAATAATCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCCTGCAATGACCGGGTTCTGAGAGGGTTACATGAATGGGAACAACACATACGTGGGCGTGGGCACCGTAAACGTATTTCTAGTCTCAAGAGCAAGGCAAAAGGTCTTAGTTTTGTGGAACATACTCATGAATCTTCTGAGAATCGAGCATAG 1422 0.4149 MTTENTVTENPSHEQRPKVVVITGPTGSGKSKLAVDLASHFPIEVINADSMQVYSGLDILTNKLPFSEQNGVPHHLLGTVNPNFEFTAKAFRDSAIPIIDDILSRNNLPVIVGGTNYYIQALVSSFLLDDSTDDLNESYLGDSPGITGYDNDVCSENDSSSNSYDFLKDIDPVAANRIHPNNHRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADDLRYDCCFISVDASLPVLDRYVEQRVDDMMDAGLLNEVYDIYSMNADYTRGLRQAIGVREFEDLLRTSVFKNINQKEVELIDRSNLENSEPLFHGNLLVWLRSSSDTKSTTLLEEAIEKVKVNTRRLVRRQKRMLTRLQTLFGWDIHYVDSTESILSRSNDVWNSQVVESATKIVSSFLSENRSLSSSNGNRTKIIQRDLWTQYTCKACNDRVLRGLHEWEQHIRGRGHRKRISSLKSKAKGLSFVEHTHESSENRA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1555 473 Pfam IPP transferase 52 349 - -
Tpr4g1555 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 399 - -
Tpr4g1555 473 Gene3D Classic Zinc Finger 418 460 - -
Tpr4g1555 473 Gene3D - 153 208 - -
Tpr4g1555 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 261 IPR027417 -
Tpr4g1555 473 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Tpr4g1555 473 TIGRFAM miaA: tRNA dimethylallyltransferase 19 283 IPR018022 GO:0008033
Tpr4g1555 473 Gene3D - 17 417 IPR027417 -
Tpr4g1555 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 399 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1555 Tpr-Chr4 15480445 15485795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1555 22 454 C2H2 Transcription Factor Family AT2G27760 57.208 8.95e-174 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1555 K00791 - gmx:100792690 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1555 4 15480445 15485795 Tpr4g1555 4 15480445 15485795 ECH