Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1552 ATGAAGACACTATACATTGAAGGAACAAACCTTATTAATTTACCATTTTACCACTCTTCCCAATTCCTCTCACCAAACCCAAATGTCCCATTCCTTGTTCCTTTTCCTTCCAAACAGATTCCAAAGTTAACTCCAAAACCTTATTCCATTTCCTTCAAAAAATCTCACTTTTCTCCAATTCAAGCTTCAATGGCTTCATCAACTCTCACAGACACAAACAAACCATTCTCAGTTCTCTTTGTCTGTCTTGGAAACATCTGTAGAAGTCCAGCTGCTGAAGGAGTTTTCACTGATTTGGTTAAGAAAAGTGGTTTTGATTCTAAGTTCAGAATTGATTCTGCTGGTACAATCAATTATCATGAAGGTAATCAAGCTGATTCAAGAATGAGGGCAGCTTCAAAAAGACGTGGGATTGAGATAACTTCAATTTCAAGGCCAATTAAGTCTTCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAAGCTTTTAATAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCCCACAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAACATGATGAAACTGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAGAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGCTGGAAAACATTTTGGCTGAAAATAAACATATACAAGAATCCTAA 735 0.3646 MKTLYIEGTNLINLPFYHSSQFLSPNPNVPFLVPFPSKQIPKLTPKPYSISFKKSHFSPIQASMASSTLTDTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKSGFDSKFRIDSAGTINYHEGNQADSRMRAASKRRGIEITSISRPIKSSDFVEFDLILAMDKQNREDILEAFNRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLENILAENKHIQES* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1552 244 Pfam Low molecular weight phosphotyrosine protein phosphatase 78 231 IPR023485 -
Tpr4g1552 244 SUPERFAMILY Phosphotyrosine protein phosphatases I 74 234 IPR036196 -
Tpr4g1552 244 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 47 239 - -
Tpr4g1552 244 PRINTS LMW phosphotyrosine protein phosphatase signature 78 95 IPR017867 GO:0004725|GO:0006470
Tpr4g1552 244 PRINTS LMW phosphotyrosine protein phosphatase signature 121 137 IPR017867 GO:0004725|GO:0006470
Tpr4g1552 244 PRINTS LMW phosphotyrosine protein phosphatase signature 205 220 IPR017867 GO:0004725|GO:0006470
Tpr4g1552 244 SMART LMWPc_2 76 233 IPR023485 -
Tpr4g1552 244 Gene3D - 60 239 - -
Tpr4g1552 244 CDD LMWPTP 77 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1552 Tpr-Chr4 15452603 15455321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1552 60 238 Protein tyrosine phosphatase (PTP) family AT3G44620 65.196 6.67e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1552 K25307 - gmx:100797254 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1552 4 15452603 15455321 Tpr4g1552 4 15452603 15455321 ECH