Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1551 ATGAACTCCGATGGCCGGAAATGGGACCGGAAAGACAACCGAATTTCCAAGAAGCAGAAACTAATCAACACCGCCGAAGAAGAACTCGAAGCAAAACTAGGGTTTGATATTTTCTCAGAAGGAGAAAAACGACTTGGATGGTTACTCACTTTTTCATCCTCGTCTTATGAGGATGAGGATACCCGCAAAGCCTATAGCTGCGTTGATCTTTACTTTGTCACACAGGATGGGTCCTCATTCAAGACAAAATACAGATTTCGCCCTTATTTCTACGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTATGAAAGCCAGATTGCAGATATTAAAATCGTAGAAAAGGAAGATCTGGATCTTAAAAACCATTTGTCTGGATTGAGAAAGTCTTATTTAAAGCTTTCATTTGATACTGTGCAACAACTGATGACTGTGAGGAATGACCTGATGCATGTTGTTGAAAGAAACAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTAACGGGGAGAAGAGAACAGAAACTTCAAGACTTTTTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGTCTGTGGTATGATGTTGGCGTGTCCAATGACGGGGTTACACTTGAGAGGAGAACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATTGAAACCACAAAACTTCCATTGAAGTTTCCTGATGCTGACTATGATTCAATTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCGAAACCAGAGTTTGAAGGGTATTTCAAAGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCGCATATGCAAGAGGTGAAACCTGGCATTTATGTGACTTATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGACGGGCAGCCCATCACGGGTTGAAAATGAGTGATGAACTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGTTTTGCATGGGTTAAACGTGACAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGTTAGGTTATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGATTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATCATACCCATGTCACCAGATGAGGTTTTGCGTAAAGGCAGTGGGACCCTCTGCGAAATGTTGCTTATGGTTCAGTCATACAAGGCTAATGTCATCTGCCCTAACAAGCACCAATCTGATGCGGAAAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTTCACTCGAGCCATCTGCCTTTGAGCAATTGATCAACAACCTTGATCGAGATCTACAATATGCTATAAGAGTAGAGGGTAAGATGGATTTGGATTCTGTCTCAAACTATGATGAAGTGAAGAATTCTATCATGGAAAAGCTTGTAAAATTACGAGATGCCCCAATACGTGACGAATGCCCACTCATTTATCATTTGGATGTAGCTGCAATGTATCCAAATATAATTTTAACAAACCGACTTCAGCCTCCATCAATTGTTACAGATGAAATTTGCACTGCATGTGACTTTAACCGTCCAGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGATCAACATTCACGGCAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTTGATGGGACAAATGAAAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGTCGAGCAACAAACAAGACTGAAAGATCGTTTAAAGAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAGCCAGTTACCGAACTCCGTGAAGCTGGAATCTGCATGCGCGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGGTATGAATATAAAGGCCTTAACAAGGTTTGGAAGGGAAAACTATCAGAGGCTAAAGCCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCTTTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGTGCAAAAATAATTCAAAATGCTCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTTGACACCGATGGTATCTGGTGTGCACTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCAAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGACGTGGCAATAAATAATACAAACGATCAGTACCAGACACTCACAGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCATACCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGATCCCTTGCGGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCCGAGCTTTTTGAGAACTTTCTCCATGGCTCAACCTTGAAGGAATGCTATTCAGAAGTTGCTTATGTGGCAAACCGCTGGCTCGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTCAGCAGAAGTCTTGTGCTGTTACCACCGCTAAACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTGGTTCTGCAATTCAGAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGATGATACCTTTAAGTCAATGAACAAGAATGAGAGCACAAAAAAGCATAATGATTCTAATGGCATGGAGGATGAGATTGTTAATGACATGGAGGACTTTGGAAACAGGGGGAGGAGTTCTACATCTGGACCTAGACCAATTATACGGCATTACAAAGCTAACCATGAACAACATTCAGAGAAGTTCAATGGTCAAGAAGATACAGAGAAGCATATTGGCAGTAGCAACATAGATCAGCCACTTTCAGTGTCACAACAAGATGAAATATGCGAAAATGTTGATAGAATTGTAGATTATCAAGGATGGCTTCAAATAAAAAAGAGAAAGTGGAAAAGTATGCTGGGAAAGAGAAAGAAGCAAAGATTGGAGAATTCAAAGAGATCTGATCATTTAAATGGCAGTCTTGAACAATCTAATGGTAAGATGAATCACGGCAAAACTAATGTCAGTTCATATTTTAGAAGGAACGAGGTAGTCCTAACACGGTGCCACTGGCAGATAATACAGCTAGTCCACAGTTCACAAGTTGGCCAATTTTTTGCTTGGGTGGTTGTTGATGGGATTATGCTCAAGATTCCTATTTCTGTTCCTAGAGTCTTTTACCTTAACTCCAGATCACAAAATGAAGAGTTTTCTGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGTTATAATCTGTATGAGGTCACAATTAATGAAGAGCAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGATTTTAACGCTATAGTCCAGCTTGGTTGTGTTTGTAAGGTGGATAAAACTGGTAAAAAGCGTAGCCTACAAGAGCCATGGAATTTGAGTGAATTGCACATGAAGACAACGACAGAATGTGCTTATCTTGAACAATCAATATCTTTTTTTTACTTATACCATAGCATCTCAGAGGGACGAGCTATATATGTTGGATATTTTCCCGGGTCACAAGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACTTATCACCAATGTTTCTCGAAAGACAATTTCGTGATGCGTGCAGAACTTTGTCTATTGAGCCACCTCTGAGGAATAACATTAATTTTAAGGTGGAATATGTTGCACTTGTCAGGGATGCTGAAACAGTAATGCAAAGCGCAATAAATGATCACAGGAGTGAACATCATGGGCCTATGGTTGCTGTCATCGAATGCCCAGATGTTCAACTATTAAAACAAGGCATTCGAGTTCTAGATGATTTTCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAATATCAGATACTTGGATGGCAACAAGTTGCTGCTAAACTTGGAATGCAACGTTGTGCGGCCTCGGTCCAGTGGCTAACTGAGAGAATTGCTCTATCCAGATATGCCCATGTACCACTGGGGAACTTTGAATTTGACTGGCTTATGTTTACAGTGGATACATTCTTTTCTAGAGCATTGCGTGATAATCAACAGGTGCTTTGGATATCTAATGATGGTTTTCCAGATTTGGGTGGCAACAATGGTGAAGAAAACTGTTTTTTAGATGAGGTGCACCAATCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCCCTTTTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTGGATCATGAATTTGATTCTGAAGCATTTCCTGTGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGCACATATGCGTTTCGAGTCCTAAAACATTTGATCCAGCGGTGCCTTTCAGATGCAGTCACATCTGGAAATGTTTTTGCCGATGCAATATTGCAACATCTGTATAGATGGCTTTGCAGCCCTCAATCAAAACTTCATGATCCCGCTCTCCACCAGTTACTCCACAAGGTCATGCACAAGGTCTTCGCGTTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTTTTTGCAAACTTCTCGAAGATTATTATAGACACTGGAAAATTTGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAGAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAACCACTGCAGTTTTGGTGCTCATTGCTATTCATGGACCAGTATAACTACGGTGGAATACCAGCAAAGTCTGATGAAGCCATGGATGATGAGTCTCAAGTTGACATAATATCAAGTTGGAATATTGCCGAATACTTGCCAAAAAAAATCCAAGACCATTATGTTTTCATAGTTTCTCAATTCATGTATATTCCTTGGAACTATGCACGAAAACAAGCAGCAATCAGGGCTTCAGTGCTGAGTGGAGACTCCTGCACCCCATCAATTAATATTGGAGCAGCAGAGGCTTTCGAATCAGAAATAACTGAATATATTAAAGAGCAGATTAGCTCTTACTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGGGCAGATCAGAAAATGATCCGAGTACATCATCTGGCCTTCCTCAACTTGCGGGTGATCTCCATAGAGGAGATGCAGCCTTGGAGTTTATCAAGCATGTCTGTGCCGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTCATGTCATGAGGAAAAATTTATTAAAATATGTTCGTGTCAGGGAGTTTGCTCCAGAAGCAGAGTTTCACGATCCTTGTCATTCCTTCACATTACCTAATGTTATCTGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGTGATCCGACTTTATTGACCGAAGAGTGGCATTGTGCTGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAGATTGCACGACAAAGGGAGCGGCAATACCACTTGCAAGATCTTGTTTGTGTCAGGTGCAATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAAGTGCAAGGAAGATGCAACAGAATTTCGCAAAAAGATGCACGTTATCTTCAACATAGCTTCTCGTCAGAAATTTCAACTTCTTCAAGAATGTACCTCCTGGATGTTAGAACTCAATATTTAA 6621 0.4067 MNSDGRKWDRKDNRISKKQKLINTAEEELEAKLGFDIFSEGEKRLGWLLTFSSSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMTVRNDLMHVVERNKAKSDAAEAYESILTGRREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVGVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSIMMISYMVDRQGYLIINRECVGDDIEDLEFTPKPEFEGYFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQSDAEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFSLEPSAFEQLINNLDRDLQYAIRVEGKMDLDSVSNYDEVKNSIMEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGSTFTAKKSDYYHLKKQIESEFVDGTNERSSKSFLDLPKVEQQTRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQAELFENFLHGSTLKECYSEVAYVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNESTKKHNDSNGMEDEIVNDMEDFGNRGRSSTSGPRPIIRHYKANHEQHSEKFNGQEDTEKHIGSSNIDQPLSVSQQDEICENVDRIVDYQGWLQIKKRKWKSMLGKRKKQRLENSKRSDHLNGSLEQSNGKMNHGKTNVSSYFRRNEVVLTRCHWQIIQLVHSSQVGQFFAWVVVDGIMLKIPISVPRVFYLNSRSQNEEFSGKRVNKTLPHGRHSYNLYEVTINEEQYKEESKKLAALLADPDVEGIYETKVPLDFNAIVQLGCVCKVDKTGKKRSLQEPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPGSQAITFVVVNPYQNKDLSPMFLERQFRDACRTLSIEPPLRNNINFKVEYVALVRDAETVMQSAINDHRSEHHGPMVAVIECPDVQLLKQGIRVLDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLTERIALSRYAHVPLGNFEFDWLMFTVDTFFSRALRDNQQVLWISNDGFPDLGGNNGEENCFLDEVHQSVCTFPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGLDHEFDSEAFPVNGQNGFDESTSCTYAFRVLKHLIQRCLSDAVTSGNVFADAILQHLYRWLCSPQSKLHDPALHQLLHKVMHKVFALLLAEFRKLGATIVFANFSKIIIDTGKFDLSTAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMDDESQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYARKQAAIRASVLSGDSCTPSINIGAAEAFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGMGRSENDPSTSSGLPQLAGDLHRGDAALEFIKHVCAVLALDQSVQHDVHVMRKNLLKYVRVREFAPEAEFHDPCHSFTLPNVICSYCNDCRDLDLCRDPTLLTEEWHCAVPQCGQPYDREVMENALLQIARQRERQYHLQDLVCVRCNQVKAAHLAEQCACAGSFKCKEDATEFRKKMHVIFNIASRQKFQLLQECTSWMLELNI* 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1551 2206 Gene3D - 238 468 IPR036397 GO:0003676
Tpr4g1551 2206 Pfam DNA polymerase family B 753 1064 IPR006134 GO:0000166|GO:0003677
Tpr4g1551 2206 MobiDBLite consensus disorder prediction 1266 1297 - -
Tpr4g1551 2206 Gene3D Palm domain of DNA polymerase 753 937 IPR023211 -
Tpr4g1551 2206 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Tpr4g1551 2206 Gene3D - 941 1125 IPR042087 -
Tpr4g1551 2206 CDD DNA_polB_epsilon_exo 240 443 - -
Tpr4g1551 2206 CDD POLBc_epsilon 503 1122 - -
Tpr4g1551 2206 SUPERFAMILY Ribonuclease H-like 58 467 IPR012337 -
Tpr4g1551 2206 SMART DUF1744_2 1507 1891 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Tpr4g1551 2206 Coils Coil 2201 2206 - -
Tpr4g1551 2206 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 32 2202 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Tpr4g1551 2206 SUPERFAMILY DNA/RNA polymerases 486 1115 IPR043502 -
Tpr4g1551 2206 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr4g1551 2206 MobiDBLite consensus disorder prediction 1283 1297 - -
Tpr4g1551 2206 MobiDBLite consensus disorder prediction 1156 1175 - -
Tpr4g1551 2206 Gene3D DNA Polymerase, chain B, domain 1 52 225 - -
Tpr4g1551 2206 Pfam Domain of unknown function (DUF1744) 1525 1891 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1551 Tpr-Chr4 15425893 15451736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1551 5 2202 Core DNA Replication Machinery Family AT2G27120 67.924 0.0 3043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1551 K02324 - gmx:100812003 3798.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1551 4 15425893 15451736 Tpr4g1551 4 15425893 15451736 ECH