Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1547 ATGGAGGGTAGACCAAACAGTCAAAATCCATTGTTCGTGAACGTAGCTTCAGGGGAAGGCATAGGAGAAGAAATTCTGGGTACTGACATATCAAATGGGGGACCTAGCTACTCTGTTGGAGGTGGTAGTTCAAACCCAGATGAAAGTTTAGATGGGTCATTTGATGAGATTTGGAATGATACAGAGGATCAAAGTTTTGGTTATGGTTGTGAAGTAGAAGCGGTTGTAATTAAAGATATGGCTGATATAATGAAGATCGACTTAAACAATTTTCGTGTAGCAGATGTACGAAAGTATGAATTTGTTGGGCTGGATGTCGCATACATGTTTTATTGTTGGTTTGCCAAAACTTCTGGGTTCTCTGTTCGCAAAGGTCATGTGGTTAGAAATCACGAAGGGAACATTCTACAACAAACATTTTTATGTTCATGTGAAGGCTTTAGAGAGGATAGTGGATTACCACTTCATCTATGGAAAAAAAAAAACACAGTTCACTACCTAGAATGGAAACTAAAATACATTTTACTATTTAACGTGAATTTATATTTGTCTTTATGTGTATAA 564 0.3688 MEGRPNSQNPLFVNVASGEGIGEEILGTDISNGGPSYSVGGGSSNPDESLDGSFDEIWNDTEDQSFGYGCEVEAVVIKDMADIMKIDLNNFRVADVRKYEFVGLDVAYMFYCWFAKTSGFSVRKGHVVRNHEGNILQQTFLCSCEGFREDSGLPLHLWKKKNTVHYLEWKLKYILLFNVNLYLSLCV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1547 187 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 78 150 - -
Tpr4g1547 187 Pfam FAR1 DNA-binding domain 110 151 IPR004330 -
Tpr4g1547 187 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 78 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1547 Tpr-Chr4 15372856 15376617 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g1547 FAR1 6.2e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1547 - - mtr:MTR_6g463250 101.293