Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1542 ATGGATTTATATTCTTCTGTCTACCAAAGCCAAAACCTTATATACTTCCCTGAAAACTCCTTCAATAATTTATTTTCCGAATTAGAAGATTTCACTAATTACTTCAATGATGATATCAACTTCAACAACAACTCACAATCACAAACCACGGAATCGTTATCCTTGCTAAACAATGAACCACTACATGTCTCATCCAATACAACTTATACTCAAGTGATGAATGAGACGCAAACATTACCATCATCATCACCACCACCGCTGATTAAAGAAAATAATAAAATACCGTTTAGAGGAGTAAGAAGAAGGCCATGGGGGAAATTCGCGGCAGAGATAAGGGACTCAACAAGAAAAGGTGCTAGAGTATGGATTGGAACATTCAATACGGCCCAAGAAGCTGCTTTAGCTTACGATCAAGCTGCTTTTTCAACTAGAGGTTCATCGGCTGTGTTGAATTTTCCAGAAGAAGTGGTTAGAGAATCACTCAAAGAAATGGCTAAAAATTCTAAGCCTTTGGAAGAAGGTACTTCCCCAGTGCTGGCAATCAAGAGCAAACACATTATGAGAAAAAGATCCAATAAGGTTAGTAAAAAGAAAATAAAAAATGACCAAATTCAGATTCAGATAGAGACCAATTCTAATTCTCAAAATGTGTTGGTGTGTGAAGATTTGGGTGCTGAATATTTGGAGCAACTATTGTACTTAACCTCATAA 711 0.3657 MDLYSSVYQSQNLIYFPENSFNNLFSELEDFTNYFNDDINFNNNSQSQTTESLSLLNNEPLHVSSNTTYTQVMNETQTLPSSSPPPLIKENNKIPFRGVRRRPWGKFAAEIRDSTRKGARVWIGTFNTAQEAALAYDQAAFSTRGSSAVLNFPEEVVRESLKEMAKNSKPLEEGTSPVLAIKSKHIMRKRSNKVSKKKIKNDQIQIQIETNSNSQNVLVCEDLGAEYLEQLLYLTS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1542 236 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Tpr4g1542 236 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Tpr4g1542 236 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 233 - -
Tpr4g1542 236 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Tpr4g1542 236 SUPERFAMILY DNA-binding domain 96 154 IPR016177 GO:0003677
Tpr4g1542 236 PANTHER DNA-BINDING DOMAIN 8 233 IPR044808 GO:0003700|GO:0009873
Tpr4g1542 236 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Tpr4g1542 236 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Tpr4g1542 236 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Tpr4g1542 236 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1542 Tpr-Chr4 15270751 15271461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1542 63 232 AP2-EREBP Transcription Factor Family AT3G23240 51.176 7.60e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr4g1542 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1542 K14516 - gmx:100779524 203.371