Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1539 ATGGATTTTTATTTCCCGGTCTACCAAAACAATAGCCTTATATATCACCCTGAAAATTCCTTCTCTAATAATTTCTCTTGGGAATTAGAAGATTTCACTAATTATTTCAATGATGATGATATTAACTTCATCAACAACTCACAATCACAAACGAAAGAATTATTATCAAATACACAAGAAATCAAAGAGACACAAACAATATCATCATCATCATCATCATCACCACCATCACCACAGCCGCCGACGATTAAAGAAAGTAATAAAAAGCCTTTTATAGGAGTAAGAACAAGGCCATGGGGAAAATTCGCGGCGGAGATAAGGGATTCAACAAGAAAAGGGGTTAGAGTATGGCTTGGAACATTCGATACTGCCGAAGCAGCTGCTTTAGCTTACGATCAAGCTGCTTTTTCAACTAGAGGTTCATCGGCAGTGTTGAATTTTCCAGAAGAAATGGTTAGAGAATCACTCAAAGAAATGGCTAAAAATTCTAAGCCTTTGGAAGAAGGTACTTCCCCAGTGTTGGCAATCAAGAGCAAACATACCTTGAGAAAAAAATCCAACAAGGTTAGAAAAAAGAAGATCAAAAGTGATTATCATAGTGATCAAATTCAGACTCATATAAAGGCCAATACTGATTCTGAAAATGTGTTGGTGCTTGAGGATTTGGGTGCTGAATATTTGGAGCAACTATTGAGTTTAACCTCATAA 708 0.363 MDFYFPVYQNNSLIYHPENSFSNNFSWELEDFTNYFNDDDINFINNSQSQTKELLSNTQEIKETQTISSSSSSSPPSPQPPTIKESNKKPFIGVRTRPWGKFAAEIRDSTRKGVRVWLGTFDTAEAAALAYDQAAFSTRGSSAVLNFPEEMVRESLKEMAKNSKPLEEGTSPVLAIKSKHTLRKKSNKVRKKKIKSDYHSDQIQTHIKANTDSENVLVLEDLGAEYLEQLLSLTS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1539 235 PANTHER DNA-BINDING DOMAIN 13 232 IPR044808 GO:0003700|GO:0009873
Tpr4g1539 235 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Tpr4g1539 235 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Tpr4g1539 235 MobiDBLite consensus disorder prediction 62 90 - -
Tpr4g1539 235 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Tpr4g1539 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 232 - -
Tpr4g1539 235 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Tpr4g1539 235 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Tpr4g1539 235 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Tpr4g1539 235 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Tpr4g1539 235 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1539 Tpr-Chr4 15204334 15205142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1539 87 232 AP2-EREBP Transcription Factor Family AT3G23240 54.110 8.51e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr4g1539 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1539 K14516 - gmx:100779524 216.853