Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1519 ATGGCTATGATGGAATTTGATGTAGAGGACAATAATTTCATTGAATGGCTCAAACCATCTAATTCCTCTCTTTCATCCCTAACTTCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACCACTCAAAATGAAACTATTCAATTCTTTCCTATGTTGAGTGCAAAGTCTTCAAAAGAGGATCAAGAACATGAAGTACCACAAATTAAGGGTTTTGATGTGGCTTTACATATTGGATTACCTCATGAAACTAAAGAAAATGATGAGAAGTTTTTCCATGCTAAAGAAGAAGAAAAGCCTTCTAAGAAAACCTTCCAAAGGTTTTGGATACCAACTTCTGCACAGATTCTTGTTGGACCTATGCAATTTTCTTGCTCCATATGCAATAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGACCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGCTACCTTGCTATTGTTGTGCTCAAGGTTGCAAGAACAATATCAATCATCCAAGAGCTAAGCCTTTGAAAGACTTTAGAACACTTCAAACTCACTACAAAAGAAAACATGGTATAAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTTGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGTAAGTTATGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCACTCAAAGATCATATTCGATCTTTCGGAAAGGGACATAATCGACTTCCGGGTCTTGATGATCGAGCTTTCGAGGAGGAGGAGGAGGAGGAGAAAGAATGTGTTACTTGTTCTCATGAAGATAAAGTTGCTCGTACATGA 900 0.3722 MAMMEFDVEDNNFIEWLKPSNSSLSSLTSSSSSSSSSSSSSSSSSSSSTTQNETIQFFPMLSAKSSKEDQEHEVPQIKGFDVALHIGLPHETKENDEKFFHAKEEEKPSKKTFQRFWIPTSAQILVGPMQFSCSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNRLPGLDDRAFEEEEEEEKECVTCSHEDKVART* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1519 299 MobiDBLite consensus disorder prediction 27 51 - -
Tpr4g1519 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 235 IPR013087 -
Tpr4g1519 299 SMART c2h2final6 215 235 IPR013087 -
Tpr4g1519 299 SMART c2h2final6 178 210 IPR013087 -
Tpr4g1519 299 SMART c2h2final6 131 153 IPR013087 -
Tpr4g1519 299 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 8 295 - -
Tpr4g1519 299 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Tpr4g1519 299 PANTHER ZINC FINGER PROTEIN WIP2 8 295 IPR043584 GO:0003700|GO:0010468
Tpr4g1519 299 SUPERFAMILY beta-beta-alpha zinc fingers 122 154 IPR036236 -
Tpr4g1519 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Tpr4g1519 299 Gene3D Classic Zinc Finger 128 153 - -
Tpr4g1519 299 Gene3D Classic Zinc Finger 172 264 - -
Tpr4g1519 299 SUPERFAMILY beta-beta-alpha zinc fingers 201 235 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1519 Tpr-Chr4 14949169 14952787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1519 6 289 C2H2 Transcription Factor Family AT1G08290 53.172 1.02e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g1519 zf-C2H2_6 0.00018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1519 - - gmx:100802773 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1519 4 14949169 14952787 Tpr4g1519 4 14949169 14952787 ECH
Tpr7g3842 7 47682735 47686295 Tpr4g1519 4 14949169 14952787 PCT