Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1509 ATGGCAGAGACAGAGGATCTTCCCAAAACTATCGTACGCCGTGTGGTGAAGGATAAGCTATCCACTTGCTCCGACGACGGCGACATTGCCGTCCACAAGGACGCTCTTCTCGCATTCTCCGAAAGTGCAAGAATCTTCATCCACTACCTTTCCGCTACGGCTAATGATATATGTAGGGAATCAAAGAGGCAAATTATCAATGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTTACTGAATTTGTTAGCCCTTTAAAAGCTTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCAGCGGTTTCAAAGGGAAAAGGAGATGAGAAGGGAAATGAGAAGAAAAAGAAAAGAAAGTTGGAAAAAGGTGAGCCATCTGATAAAGGTGATGACCAATAA 408 0.4265 MAETEDLPKTIVRRVVKDKLSTCSDDGDIAVHKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFTEFVSPLKASLEEFRKKNAGKKAAVSKGKGDEKGNEKKKKRKLEKGEPSDKGDDQ* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1509 135 Coils Coil 58 78 - -
Tpr4g1509 135 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7 75 IPR003958 -
Tpr4g1509 135 SUPERFAMILY Histone-fold 7 118 IPR009072 GO:0046982
Tpr4g1509 135 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 132 - -
Tpr4g1509 135 MobiDBLite consensus disorder prediction 98 135 - -
Tpr4g1509 135 Gene3D Histone, subunit A 1 135 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1509 7 129 CCAAT-HAP3 Transcription Factor Family AT3G53340 31.707 5.48e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr4g1509 CBFD_NFYB_HMF 2.4e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1509 K02326 - gmx:100306382 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1509 4 14857230 14859260 Tpr4g1509 4 14857230 14859260 ECH