Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1508 ATGCCGAGGGGAAAGCCAAATTCTTCATCAGTTGCTAAACAGTCTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTTGACCTTGAAGAGGAAAATGATCCCGAGGAAGAAATGGAAGAAGAGGTTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAGGAGGATCCGGATGAGGTAGAGGAAGAAGAAGAGGAAGAGGAGGAGGAAGAGGTCGAAGAAGTGGAAGAAGATGATGCCACGGAAAACCACATCATTGGTGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTTTACATAGGTGGCATTCCTCTTGATGCGCTAACTGAAGATTTAAAAGAATTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTAGAATAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGCTTTTGTGACTTATAGAAATGTAGAACTGGCTACTAAAGCCATCGAGGAGCTGAATAATACCATATTTAAGGGTAGAAAAATAAAATGTTCTACATCTCAAGCCAAAAATCGTCTTTTTATTGGCAATATTCCTAGAAGCTGGGGCGAAAAAGACCTGAAGAAGGTTGTGACTGCGATTGGACCTGGAGTTACTGCTGTTGAACTAGTCAAGGATATGAAGAACATTAGCAATAACCGTGGCTTTGCTTTTATCGACTATCATAATAATGCATGTGCTGAATATTCAAAGCAAAAGATGACGAACCCAACATTTAAGCTTGGTGACAATTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTAAAGGCAGTATATGTGAAGGGCCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAAAAGCTTTTTGAACACCATGGGAAGATCACCAAGGTGGTTCTTCCACCACCAAAGTCTGGTCAGGAAAAGAACAGAATTGGCTTTGTGCATTTTGCAGAGAGATCAAATGCTATGAAAGCACTCAAAAACACTGAAAGATATGAGTTAGCAGGTCAAATGTTAGAGTGTTCTCTAGCAAAGCCACAGGCTGATCAGAAGGCTGGAGTATCAAATACACAGAATCAAGGATTGCTTCCAAGTTATCCGCCACATGTTGGTTACGGTTTGGTTGGGAATCCCTATGGTGCACTCGGTGCAGGATTTGGTGCTCCTGGTCTTGCACAGCCTTTGATGTATGGACCGGGTCAAACTCCTGCTGGAATGGCCATGATGCCAATGCTTCTGGCTGATGGACGCATTGGATATGTATTGCAACAACCAGGATTGCAGCCGCACACCCCGCCTTCACATCAAAGAGGCGGAAGGAATGACAGTGGTAGTGGTGGGGGTGGGAGTGGTGGTGGCAGCAGGAATCCGGGCAGTTCAAGTAAGGGAAGACACAGCAATGATAGTGGTCAAGGGCGCAGATACCGCCCGTATTAG 1500 0.4407 MPRGKPNSSSVAKQSEPEKPVESDEKVDLEEENDPEEEMEEEVEYEEVEEEEEVEEIEEEVEEEEDPDEVEEEEEEEEEEEVEEVEEDDATENHIIGDDEKKKHAELLSLPPHKSEVYIGGIPLDALTEDLKEFCERIGEVVQVRIMKGKDSSENKGFAFVTYRNVELATKAIEELNNTIFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTAIGPGVTAVELVKDMKNISNNRGFAFIDYHNNACAEYSKQKMTNPTFKLGDNSPTVSWADPKNADSSASSQVKAVYVKGLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELAGQMLECSLAKPQADQKAGVSNTQNQGLLPSYPPHVGYGLVGNPYGALGAGFGAPGLAQPLMYGPGQTPAGMAMMPMLLADGRIGYVLQQPGLQPHTPPSHQRGGRNDSGSGGGGSGGGSRNPGSSSKGRHSNDSGQGRRYRPY* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1508 499 MobiDBLite consensus disorder prediction 449 499 - -
Tpr4g1508 499 Gene3D - 5 195 IPR012677 -
Tpr4g1508 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 277 IPR000504 GO:0003723
Tpr4g1508 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
Tpr4g1508 499 Coils Coil 36 88 - -
Tpr4g1508 499 CDD RRM_SF 117 189 - -
Tpr4g1508 499 SMART rrm1_1 290 363 IPR000504 GO:0003723
Tpr4g1508 499 SMART rrm1_1 196 273 IPR000504 GO:0003723
Tpr4g1508 499 SMART rrm1_1 116 189 IPR000504 GO:0003723
Tpr4g1508 499 MobiDBLite consensus disorder prediction 449 487 - -
Tpr4g1508 499 PANTHER RNA RECOGNITION MOTIF 1 467 - -
Tpr4g1508 499 MobiDBLite consensus disorder prediction 27 93 - -
Tpr4g1508 499 MobiDBLite consensus disorder prediction 1 100 - -
Tpr4g1508 499 Gene3D - 196 276 IPR012677 -
Tpr4g1508 499 SUPERFAMILY RNA-binding domain, RBD 284 386 IPR035979 GO:0003676
Tpr4g1508 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Tpr4g1508 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Tpr4g1508 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
Tpr4g1508 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Tpr4g1508 499 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 467 - -
Tpr4g1508 499 SUPERFAMILY RNA-binding domain, RBD 115 281 IPR035979 GO:0003676
Tpr4g1508 499 Gene3D - 278 387 IPR012677 -
Tpr4g1508 499 SMART rrm2_1 290 363 IPR003954 GO:0003676
Tpr4g1508 499 SMART rrm2_1 116 189 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1508 Tpr-Chr4 14847086 14856204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1508 131 467 Eukaryotic Initiation Factors Gene Family AT2G23350 25.067 5.54e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1508 K13161 - gmx:100806658 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1508 4 14847086 14856204 Tpr4g1508 4 14847086 14856204 ECH