Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1500 ATGGAAGATCTCTTCCCTCCTGGCTTTCGTTTCTTCCCTACAGAAGAAGAGCTTGTTAGCTTTTACCTTAACAATAAGCTACAAGGACAAACAAATTATATAGATAGGGTCATTCCTGTCATTGACATCAATGGTGTAGAACCATCGAATCTCCCAACTCTTGCGGGGGAGCTTTGTCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCGCCAGGGCAAGAGAGAGAAGCGAGGGGAGGAAGACCTAATAGAACAACTGCTTGTGGGTATTGGAAGGCAACTGGTTCACCTGGTTATGTTTATTCTTCAGATAATAAAGTTATTGGGGTGAAGAAAACCATGGTTTTTTACGAAGGAAAGGCACCTAGTGGAAAGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCAAGTTTCTAACCAATCAAATACTGCCACACCACAGTTGAGACGAGAATTCAGCTTGTGTCGAGTGTACGTGATATCTGGAAGCTTTCGAGCATTTGATAGACGCCCATTAGAAAAGAAAAGAGTTAATCAATTGCAGGTTAATCATGAGATTAATCAAAATCCAATTAGTGCTAATCAAGCTACACAAATGGATGCATCAAGTTCATTTGAAAATTCTCATCTTCACAGTGCTCAAATGCAAGAGGATGTAGGAAGTTCAAATAGCACTAATTGGGATGTAAATAACAATGACAATGATAATGATGTTGATTTCCAATCACTTTGGGAATGGGATGGAGTGTGGTGA 759 0.3939 MEDLFPPGFRFFPTEEELVSFYLNNKLQGQTNYIDRVIPVIDINGVEPSNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYEGKAPSGKKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRVYVISGSFRAFDRRPLEKKRVNQLQVNHEINQNPISANQATQMDASSSFENSHLHSAQMQEDVGSSNSTNWDVNNNDNDNDVDFQSLWEWDGVW* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1500 252 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Tpr4g1500 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 249 - -
Tpr4g1500 252 ProSiteProfiles NAC domain profile. 5 162 IPR003441 GO:0003677|GO:0006355
Tpr4g1500 252 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Tpr4g1500 252 MobiDBLite consensus disorder prediction 197 224 - -
Tpr4g1500 252 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 5 249 - -
Tpr4g1500 252 Gene3D NAC domain 14 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1500 Tpr-Chr4 14781429 14784735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1500 1 249 NAC Transcription Factor Family AT5G22380 53.200 2.81e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr4g1500 NAM 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1500 - - cam:101497878 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1500 4 14781429 14784735 Tpr4g1500 4 14781429 14784735 ECH
Tpr7g3863 7 47859025 47860909 Tpr4g1500 4 14781429 14784735 PCT