Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1479 ATGTCGGGCAACCGAGCTCCTCCACCCGCCGCTTCTCCCTCGCCGGACCAGATCATGCAATCCATGAAACGCCAACTCCCTTTCTCCTCCATGAAACCTCCGTTTCTAGCTTCCTCTGATTATCATCGCTTTGCCCCTGACCACCGCCGGAATCTCGACCAGGAAACTGAAGCTATCGTCGTTAAGACTCCTCCATTGAAGCGGAAAAGTGAAGCAGCTGATCTTGAAGCTGATTCAGGTGATAGGATGACCCCTGGATCCACTCAAGCAGCCAATGGTCCTTTTCAGACGCCTGTATCTGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGCTGACAAAAGCCAACAGATCTGGAACGCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCTGGTCCATGTCGATATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATAAATTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTTAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGTCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGAAGCTGATGATAGTTTTGCTAGTTTACAGGCAGAGATTGAAAATTTAACAATGGAGGAACGTCGGTTAGATGAAGAAATAAGGGAGATGCAAGAAAAGCTACGGGATCTTAGTGAAGATGAAAATAATGAGAAGTTGCTTTTTGTAACTGAGGATGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACCACTTTGGAAGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGTCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATCAATGGTGTTGATGTTGCACCCAAAGTTCCATCCAGTCTAGAAGTTAATATGCATCAATCAACTGTGGTCCCAGAGGATAAAGGGAAGGAAATAGAAGTGCAGCCACAAGATGGTGAAGGGCCTAGTTCAGATCCTACCAACTCTCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTACTGATGCTGATTACTGGCTTTTATCAGATGCCGGTGTTAGCATAACCGATATGTGGAGAACAGAACCCGGAGTTGAATGGAATGAACTCAACGCATTTCAAGAAGATTTTTGTATGGCCCGTGAGCACACTACAACCCCAAATAATGCTTCAAACATAGGTGAAGTGTCTTCCACATCCAACCCTACAGTTGGATGA 1386 0.4401 MSGNRAPPPAASPSPDQIMQSMKRQLPFSSMKPPFLASSDYHRFAPDHRRNLDQETEAIVVKTPPLKRKSEAADLEADSGDRMTPGSTQAANGPFQTPVSGKMGKGGKSSRLTKANRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTMEERRLDEEIREMQEKLRDLSEDENNEKLLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKVPSSLEVNMHQSTVVPEDKGKEIEVQPQDGEGPSSDPTNSHDFVSGIMKIVPSDVATDADYWLLSDAGVSITDMWRTEPGVEWNELNAFQEDFCMAREHTTTPNNASNIGEVSSTSNPTVG* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1479 461 Coils Coil 220 261 - -
Tpr4g1479 461 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Tpr4g1479 461 Coils Coil 158 178 - -
Tpr4g1479 461 MobiDBLite consensus disorder prediction 441 461 - -
Tpr4g1479 461 PANTHER TRANSCRIPTION FACTOR E2F 19 448 IPR015633 GO:0000978|GO:0006357
Tpr4g1479 461 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Tpr4g1479 461 Gene3D - 214 324 - -
Tpr4g1479 461 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Tpr4g1479 461 MobiDBLite consensus disorder prediction 111 135 - -
Tpr4g1479 461 Gene3D - 136 209 IPR036388 -
Tpr4g1479 461 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Tpr4g1479 461 MobiDBLite consensus disorder prediction 1 135 - -
Tpr4g1479 461 CDD E2F_DD 218 324 IPR032198 GO:0046983
Tpr4g1479 461 PANTHER TRANSCRIPTION FACTOR E2FB 19 448 - -
Tpr4g1479 461 MobiDBLite consensus disorder prediction 42 78 - -
Tpr4g1479 461 MobiDBLite consensus disorder prediction 82 96 - -
Tpr4g1479 461 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1479 Tpr-Chr4 14552995 14558943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1479 17 434 E2F-DP Transcription Factor Family AT5G22220 58.691 7.57e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tpr4g1479 E2F_CC-MB 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1479 K06620 - gmx:100819817 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1479 4 14552995 14558943 Tpr4g1479 4 14552995 14558943 ECH