Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1465 ATGGATGAAATTGAAACTCCTCCATTTTTTTTGTGTCCAATTTCATTTCAAATCATGAAAGAACCGGTGACAACCGTGACTGGAATAACATACGACCGAGAAAGTATCGAAAAATGGTTGTTGAAGGCCAAGATATGTGTTTGTCCAGTTACAAACCAATCACTACCAAGAGCTAGAGAATATTTGACTCCAAATCACACACTTCAAAGGCTAATCAAAGCATGGATTTCATCAAATGAAGCCAAAGGTGTTGGTGATGATCAAATTTCATCTCCTAAATCTCCTATCAATAGAATCCATCTTCAAAAGCTTGTCAAGAATCTTGAGGTTCCTCATTGTTATCAAGCATCAATGGAGAAGATTCATGATCTTGCTAAACAAGGTGAGAGAAATAGAACATGCATGGTTGAAGTTGGTGTAACAAAAGCAATGGTTATGGTGATTAAAAAGAATTTCAAAGAAGGAAATACCAATGGTTTAGAAGAAGCTTTGAAGATTATTCGTCTTTTGTGGCATGAAGCAATGATCAAGAACAAGATCAAGCATTTGATTAGAGAAAACATGGATTTCATCAACTCTTTGACTTGGATTTTGAAAATTCATGTGGATAACAAAAATATCAACATGGTAAATGAAGTTATGCCATTATTAAAGTTGACAATTGATGTTGTTGATTCAACACTTTTAGGAAATTTAAACATTGAATTCTTTAGAGAAATTGTGAGAGTAATTCGAAAGCGAGGATTAATCTCTAAACAAGCTATTAAATCGGCTTTACATGTGCTTGTAGACGCGTGCCCGTTGGGTATAAACCGAACGAAGATCGTGGAAGCAGGTGGAGTAACCGAGCTTGTTGAACTCGAGCTTGAAAAACCCGAGAAGAACATTACCGAGCTTGTATTCAACCTTTTGGCACATTTGTGCTCGTGTGCGGAAGGAAGAGAACAATTTTTGCGACACGCGGCTGGTTTAGCGATGATTTCGAAAAGGATTTTGAGGGTCTCAGCCGCAACCGATGATCTAGCCATTCAAGTAATTTCAGTGATTGCGAAGTATTCAACTTCGAAAGAGATTGTTTTAGAGATGTTGAGGGTTGGAACGGTTTCGAAGCTTTGCATGGTAATGCAAGCAGATTGTGCTTCTTATTTGAAAGTGAAAGCTAGAGACATACTTAGGTTACATTCAACTTCTTGGAATAATTCTCCTTGCATACAAGTGTATTTGTTAACTAGGCACCAAAGGTGA 1245 0.3727 MDEIETPPFFLCPISFQIMKEPVTTVTGITYDRESIEKWLLKAKICVCPVTNQSLPRAREYLTPNHTLQRLIKAWISSNEAKGVGDDQISSPKSPINRIHLQKLVKNLEVPHCYQASMEKIHDLAKQGERNRTCMVEVGVTKAMVMVIKKNFKEGNTNGLEEALKIIRLLWHEAMIKNKIKHLIRENMDFINSLTWILKIHVDNKNINMVNEVMPLLKLTIDVVDSTLLGNLNIEFFREIVRVIRKRGLISKQAIKSALHVLVDACPLGINRTKIVEAGGVTELVELELEKPEKNITELVFNLLAHLCSCAEGREQFLRHAAGLAMISKRILRVSAATDDLAIQVISVIAKYSTSKEIVLEMLRVGTVSKLCMVMQADCASYLKVKARDILRLHSTSWNNSPCIQVYLLTRHQR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1465 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Tpr4g1465 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Tpr4g1465 414 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Tpr4g1465 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Tpr4g1465 414 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 412 - -
Tpr4g1465 414 PANTHER WDSAM1 PROTEIN 1 412 IPR045185 GO:0061630
Tpr4g1465 414 SUPERFAMILY RING/U-box 3 82 - -
Tpr4g1465 414 SUPERFAMILY ARM repeat 111 381 IPR016024 -
Tpr4g1465 414 CDD RING-Ubox_PUB 10 53 IPR045210 -
Tpr4g1465 414 Gene3D - 109 397 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1465 Tpr-Chr4 14316223 14317704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1465 2 411 U-box Gene Family AT3G11840 36.842 4.42e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1465 - - gmx:100811293 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1465 4 14316223 14317704 Tpr4g1465 4 14316223 14317704 ECH