Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1453 ATGTCAATGGACATGATGGGAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACAATTCTTGCGGTTAATGTTCCATACAGTAGTATGCTAACCATAGTGACAGTAAGATGTGGACATTGTGCTAATTTGTTATCTGTTAACATGGTGGCTGCATCACTTCAACCATTTTCTCCTCCTCAACTGCCTCAGGCACAGAAACAGCACATAATCCTTGAAGAACCAAGCAGCAAAGAAATGGGTTCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCTGTAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATTAAGGCCGGTAATCCAGATATCAGCCATAGGGAGGCTTTCAGTTCGGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAATTGGACCATGGTGAAGGAACTCATGAAAAGACTAATGGATTCTACTAA 546 0.4084 MSMDMMGTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQAQKQHIILEEPSSKEMGSSSKCNKIASFEAVVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKAGNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTHEKTNGFY* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1453 181 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Tpr4g1453 181 Gene3D High mobility group box domain 112 166 IPR036910 -
Tpr4g1453 181 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Tpr4g1453 181 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 181 - -
Tpr4g1453 181 SUPERFAMILY HMG-box 107 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1453 Tpr-Chr4 14136363 14143543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1453 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 57.143 2.69e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tpr4g1453 YABBY 4.3e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1453 K25796 - gmx:100500091 270.781