Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1447 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGATAAAACAAACAATGCCGACGGTAACTCCAACAAACCCTCCGGTCAACCTAAACCTACTCCGGCTAAACCCGACCTGGAGAAAACTGTGCCTGAAGGTCAAACAAGTTCGGGCAGAAGGAAAACTAGCAAATATTTTAATACGGATAAGCCAAAGGCAAAAGAAGAGGTAGAAACGCAGGTGCTCCCTGCTAAAAGAAAGAATACGAAGGACAGTAATGAAGATGATGAAGATGACTCTGTTCTGCCCACTAATCAAAAGAAATTAGCTGGTTCCACTCCTACAAAAAAATTGAAGAGTGGGTCGGGTAGGGGAATCCCCCAGAAACCTGCAAATTTGGATGAAAGTGATGAAGACGATCAGAAAGATGCTGTGTCTCCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCAACACAAGCAACTGGTGGGAGAGGCCGAGGGGGTGGTAGGGGGACCACCCAGAAATCTGCAGATTTGGAAGAAATTGATGAAGATGACGACAAAAATGCTGTGTCTCCTGCTAAATCTGGTGGACGGGGTCGTGGTGGAAGAGGAGCTTCAACACAAGCATCTGGTGGAAGGGGCCGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGTGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGTTTAACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATTTGTTATGTGACGATGATATTGGGGGAAGGAAGTCTGAAAAAGCAAAAGAGCTAGGAACTTCATTCCTCACAGAGGATGGATTGTTTGATATGATCCGGGCATCAAAACCTGCAAAAGCTCCCAAGCAAGAGGAATGCAAAAAACCTGTGAATAAGGCTGTTGCAGCGCCACTGCCATCCCCGTCAAAAGTTCCTCTGAAAGCAGAAACAAAGGCCTCATTGTCTTCATGCTCACTTTCCAACAAAGCCAAGCCTGAGAAGGCTACTACCGTTCAATCTAATTTGACGTGGACAGAGAAACATCGACCTAAAAACGCAAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGGTTGGCATGAGCAATTTTCTAACACTGGTGGCAATGAAAAAGGAAAAAAGCAGAATGACCCTAATTTCAAAAAGGCTGTCTTGTTAAGCGGAACCCCTGGTATAGGCAAAACAACTTCAGCAAAGCTGGTGTGTCAGGAGCTTGGTTTCGAAGCCATGGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAGGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAATTTGTGGACAATAAGACCTTGGAATTTGGGGACAAGGATAGGTCAAAGCAGTCCAAAACTGTTCTTATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATCATCTGCATTTGTAATGACCGTTATAGCCAGAAACTAAAAAGCCTAGTGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTCATGGAGGTTGCAAAGGCTGAAGGGCTTCAAGTTAATCAGATTGCTCTTGAGGAATTAGCTGAAAGAGTTAATGGAGATATGCGTATGGCACTAAACCAGTTACAATATATGGGCCTCACCATGTCAGTGATCAACTACGATGATATTAGGCAGCGCTTGCTCACCAATGCGAAAGATGAAGATATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAACGCTGGAAAGATGAAATGGGATGAGAGGATTAATCTTAGCATGAGTGATCCCGATCTTGTTCCTCTGATTATCCAGGAAAATTATATTAATTATAGACCAAGCTCTGTTAGTAAGGATGACAATGGTATAAAACGCATGAACTTGATTGCCCGTGCTGCTGAGTCTATTGCCAGTGGGGATATAGTGAACGTGCAAATTCGCAGATATCGACAATGGCAGCTCTCTCAAACTAGTTCTGTAGCATCATGCATACTTCCTGCTTCATTGTTACATGGGCAAAGGGAAACACTTGAACCGGGAGAACGTAATTTTAATCGATTTGGTGGGTGGCTGGGAAAGAATTCGACAACGGGTAAAAACATGAGGCTTATGGACGACCTGCATGTTCACATTCTTGCATCTCGCGAATCTAGTTCGGGAAGGAATACTATTCGCTTGGAATACCTTTCTCTTATGCTTAAAAAACTTACAGAACCTCTCCGAGTCCTGCCTAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATATTCAATCAGCATGGAAGATTTTGATACTATAGTAGAATTATCAAAATTCAAGGGTCATGCTAATCCGCTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCTGAGCAAAACTCGGACGGTTCGAGCTGCTGATCTAATTACTCTTCCTGGAATTAAAAAGGCACCTAAGAAGCGGATTGCTGCTATTTTAGAACCAGCTGATGAAGGTGTGGAACAAGGTGATGGTGGCAACGCCTTGGACGAGAGTGATGAAGATAACACCTCTGACAATGATGAGTCAGGCGCCACAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAATTCAAAGGGCATGCAAGTACAATTGGAATTGAAGGGAGCAGGAAGTTCCAAGAAGACATCTGGTGGTAGAGGTAAAGGTGCTTCCACATCTGCGCAGAAGGTTGCTCAAACATCAAAGACTCCTGCAAAAAGAAAAAGGTGA 2985 0.4342 MSDIRKWFMKSHDKTNNADGNSNKPSGQPKPTPAKPDLEKTVPEGQTSSGRRKTSKYFNTDKPKAKEEVETQVLPAKRKNTKDSNEDDEDDSVLPTNQKKLAGSTPTKKLKSGSGRGIPQKPANLDESDEDDQKDAVSPIKSGGRGRGGRGASTQATGGRGRGGGRGTTQKSADLEEIDEDDDKNAVSPAKSGGRGRGGRGASTQASGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDDDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPKQEECKKPVNKAVAAPLPSPSKVPLKAETKASLSSCSLSNKAKPEKATTVQSNLTWTEKHRPKNAKDIIGNQSLVSQLRNWLKGWHEQFSNTGGNEKGKKQNDPNFKKAVLLSGTPGIGKTTSAKLVCQELGFEAMEVNASDSRGKADSKIEKGISGSNANSIKEFVDNKTLEFGDKDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNQIALEELAERVNGDMRMALNQLQYMGLTMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKWDERINLSMSDPDLVPLIIQENYINYRPSSVSKDDNGIKRMNLIARAAESIASGDIVNVQIRRYRQWQLSQTSSVASCILPASLLHGQRETLEPGERNFNRFGGWLGKNSTTGKNMRLMDDLHVHILASRESSSGRNTIRLEYLSLMLKKLTEPLRVLPKAEAVEKVVEFMNTYSISMEDFDTIVELSKFKGHANPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRIAAILEPADEGVEQGDGGNALDESDEDNTSDNDESGATTGEKLKSELQSLNSKGMQVQLELKGAGSSKKTSGGRGKGASTSAQKVAQTSKTPAKRKR* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1447 994 Pfam Replication factor RFC1 C terminal domain 709 871 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Tpr4g1447 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 629 IPR027417 -
Tpr4g1447 994 SUPERFAMILY post-AAA+ oligomerization domain-like 640 785 IPR008921 GO:0003677|GO:0006260
Tpr4g1447 994 CDD BRCT_RFC1 239 317 - -
Tpr4g1447 994 PIRSF RFC1 1 971 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Tpr4g1447 994 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 967 - -
Tpr4g1447 994 Pfam BRCA1 C Terminus (BRCT) domain 241 316 IPR001357 -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 1 240 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 55 86 - -
Tpr4g1447 994 CDD AAA 432 532 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 223 237 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 930 953 - -
Tpr4g1447 994 CDD HLD_clamp_RFC 569 627 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 903 994 - -
Tpr4g1447 994 Gene3D BRCT domain 216 318 IPR036420 -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 97 111 - -
Tpr4g1447 994 SMART BRCT_7 241 319 IPR001357 -
Tpr4g1447 994 Pfam ATPase family associated with various cellular activities (AAA) 435 535 IPR003959 GO:0005524|GO:0016887
Tpr4g1447 994 Gene3D - 641 750 - -
Tpr4g1447 994 SMART AAA_5 431 570 IPR003593 -
Tpr4g1447 994 Gene3D - 379 568 IPR027417 -
Tpr4g1447 994 Gene3D - 569 639 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 969 986 - -
Tpr4g1447 994 SUPERFAMILY BRCT domain 239 320 IPR036420 -
Tpr4g1447 994 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 967 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 14 28 - -
Tpr4g1447 994 MobiDBLite consensus disorder prediction 123 138 - -
Tpr4g1447 994 ProSiteProfiles BRCT domain profile. 239 320 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1447 Tpr-Chr4 14082374 14091937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1447 1 951 Core DNA Replication Machinery Family AT5G22010 63.532 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1447 K10754 - gmx:100790070 1363.98