Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1426 ATGGAACTTCGTTCTTGTCGTCGCGTTTCCGATGAAAACGATTCCGAGGATAGGAAGGGGAAGAAGCCGATGATTGATGATACTGATGGGAAGTGTGACATTGATACCGATGAAGACGATCCTGCCGTGTATTTGAAATCTGATTCTGATTATGAAGCTGAAGACTTGGGTGGGAACTTCCCATTTGACTTGAATCAAGACCCAACTTTAAGCGATAGTGATTTTGATGGAGAAGATTATGCTTCTGATTTTTCTGATGGTAGTGAGTCTTTATCTAAAAGGATAATGGCACAGTCCAGAAAGAGAGGAAGAAAATCCAAGACTGAAATCGGAGGTTTTATTGATATAGCTGATTTAGCTAGAGCGTTGGAGGAGAATGAGTTGCCTACGATGGTTTTTGATGAAGCTCCAGTTGTTTTACCTATGGTGAATAGGAAGACAAAAGCAAAGAAGGCAAAAAAGGGAGATAAGCCAGTGTTGTTATGGCATGCTTGGCAAGAAGAACATGAGAGATGGATTGATCAGAATTTGTTGGAAGACGTTAACTTGGATCAAAGTGAAGTGATGCATGAGACGGCCGAGGCATCGTCAGATCTGATTATTCCTTTGCTGAGGTACCAAAGGGAATGGTTATCCTGGGCTTTGAAGCAGGAAAGTTCTGTAGCTAGAGGAGGAATCCTCGCTGATGAAATGGGCATGGGGAAAACTCTTCAAGCAATTGCCCTTGTCCTTGCTAAACGTGAATTACAACAAATGAGTTGTGAACCAGATGAACAATCACATTCGCCAGGGTCATCTAAAGTCCTTCCTGTGATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTTAATCAGTGGGTTACTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAAGTTCTGGTTTATCATGGGCCGAAGAGAGAGAAGATTGCCGAACAGTTCTCAGAGTATGATTTTGTTATATCAACATATGCTCTTGTTGAATCAGAGTACAGAAAGCATGTGATGCCTCCTAAGGAGAAGTGTCCATATTGTGGAAAATTATATAACCCGAGTAAGCTAACTATTCACCTGAAGTACCATTGTGGGCCCAATGCTATTAAAACAAACAAACAATCAAAGCAAAGCAAGAAAAAGAAAAGTGGTCAGAGTTCAAAGATGGATGGAGAGTTGGAACATAATCCTATTAAGAAGAAGGTAGAGGAAATGCGCCTCGGAGTAGAAGGCAATGAGAAGTCATTTTTGCATGCTGTAAAGTGGCAGAGGATCATATTGGATGAGGCACACTGTATAAAATCTAGGCATTGTAACACTACAAAAGCAGTTCTTGCTTTAGAGTCTTCTTACAAATGGGCATTAAGTGGTACACCCCTTCAGAATCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCTTTTTCCTATAACCTGTGCAAGGACTGTGATTGCAGGATACTTGATCATAGCTCGTCTAAAGAATGTCCAAACTGCTCTCACAGTTCAGTTAGGCATTTTTGCTGGTGGAACAAAAATATTGCGACTCCAATTCAAACACACGGGTATGGCAATAGTGGCAAAAGAGCTATGATATTGCTCAAAAACAAAATTTTGAAGAGCATAGTTTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCGCCTAGGATCGTTTCATTGAGGAGGGATAGTCTGGATATAAAAGAGCAAGACTATTACGAATCACTATATAATGAAAGTCAGTCACAGTTTAATACATATGTCGAAGCAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCCGCAGCACTAAAAGGTGAAAACTTGGCTAGCAATGGTGAACAAGAATGTGGCCTTTGTCACGATACTGTGGAAGATCCTGTGGTTACCTCTTGTCAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCTTTGGGACGTGTATCGTGCCCCTCATGCTCTACATTACTCACTGTTGATTTGACTTCCAACAATGATGCTGTGGTTAATAAAACAACAATCAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAGATCGAGAATTTTCAGACGAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCAGCAAAAGCAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTTATAAACTACTCCTTGCAAAAGTCAGGTGTATCTTGCGTTCAATTGAATGGAACCATGACAATGGCTGCTCGGGATGCTGCCATTAAGAAATTTACTGATGATCCAGACTGCAAAATTTTTCTCATAAGCTTGAAAGCCGGAGGTGTTGCTCTGAATTTGACCGTCGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAGGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATTGAGGAGAGGATCTTGAAACTGCAAGAGAAGAAGGAACTAGTATTTGAAGGGACTATAGGCGGCTCTAACGAGGCTCTAGGGAAGTTGACGGTGGCCGACTTAAAATTTCTCTTTGCTAACTAA 2703 0.4103 MELRSCRRVSDENDSEDRKGKKPMIDDTDGKCDIDTDEDDPAVYLKSDSDYEAEDLGGNFPFDLNQDPTLSDSDFDGEDYASDFSDGSESLSKRIMAQSRKRGRKSKTEIGGFIDIADLARALEENELPTMVFDEAPVVLPMVNRKTKAKKAKKGDKPVLLWHAWQEEHERWIDQNLLEDVNLDQSEVMHETAEASSDLIIPLLRYQREWLSWALKQESSVARGGILADEMGMGKTLQAIALVLAKRELQQMSCEPDEQSHSPGSSKVLPVIKGTLVICPVVAVNQWVTEIDRFTLKGSTKVLVYHGPKREKIAEQFSEYDFVISTYALVESEYRKHVMPPKEKCPYCGKLYNPSKLTIHLKYHCGPNAIKTNKQSKQSKKKKSGQSSKMDGELEHNPIKKKVEEMRLGVEGNEKSFLHAVKWQRIILDEAHCIKSRHCNTTKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQIVPFSYNLCKDCDCRILDHSSSKECPNCSHSSVRHFCWWNKNIATPIQTHGYGNSGKRAMILLKNKILKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQSQFNTYVEANTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGENLASNGEQECGLCHDTVEDPVVTSCQHTFCKGCLIDFSASLGRVSCPSCSTLLTVDLTSNNDAVVNKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLNGTMTMAARDAAIKKFTDDPDCKIFLISLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSNEALGKLTVADLKFLFAN* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1426 900 Pfam SNF2-related domain 218 626 IPR000330 GO:0005524|GO:0140658
Tpr4g1426 900 Gene3D - 205 345 IPR038718 -
Tpr4g1426 900 ProSitePatterns Zinc finger RING-type signature. 663 672 IPR017907 -
Tpr4g1426 900 CDD SF2_C_SNF 728 855 - -
Tpr4g1426 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 714 IPR013083 -
Tpr4g1426 900 Pfam Helicase conserved C-terminal domain 730 844 IPR001650 -
Tpr4g1426 900 SUPERFAMILY RING/U-box 643 692 - -
Tpr4g1426 900 MobiDBLite consensus disorder prediction 1 30 - -
Tpr4g1426 900 Coils Coil 717 737 - -
Tpr4g1426 900 SMART helicmild6 761 844 IPR001650 -
Tpr4g1426 900 SMART ring_2 648 687 IPR001841 -
Tpr4g1426 900 Gene3D - 566 898 IPR027417 -
Tpr4g1426 900 MobiDBLite consensus disorder prediction 372 395 - -
Tpr4g1426 900 CDD DEXDc_SHPRH-like 203 551 - -
Tpr4g1426 900 PANTHER - 414 735 - -
Tpr4g1426 900 PANTHER - 737 897 - -
Tpr4g1426 900 PANTHER - 143 390 - -
Tpr4g1426 900 Gene3D - 356 565 IPR038718 -
Tpr4g1426 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 899 IPR027417 -
Tpr4g1426 900 SMART ultradead3 199 496 IPR014001 -
Tpr4g1426 900 MobiDBLite consensus disorder prediction 1 50 - -
Tpr4g1426 900 Pfam Zinc finger, C3HC4 type (RING finger) 647 687 - -
Tpr4g1426 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 890 IPR001650 -
Tpr4g1426 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 737 897 - -
Tpr4g1426 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 414 735 - -
Tpr4g1426 900 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 143 390 - -
Tpr4g1426 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 478 IPR014001 -
Tpr4g1426 900 ProSiteProfiles Zinc finger RING-type profile. 648 688 IPR001841 -
Tpr4g1426 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 551 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1426 Tpr-Chr4 13912563 13920215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1426 126 898 RAD5 or RAD16-like Gene Family AT1G05120 65.903 0.0 1062
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr4g1426 SNF2_N 5.2e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1426 K15083 - gmx:100786366 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1426 4 13912563 13920215 Tpr4g1426 4 13912563 13920215 ECH