Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1405 ATGTTTCAGTCAAACTTGTTGGAAGCTGGTCAGTTTCATCCGTTAGAGATGATGCAAAACACTTCAGAAAGTGATGTTCCTCGAATCCGTGAAGATGAATGTTTTGAAAGTGCCACAAAATCTTGCAGTGAAAATCATGAAGGTGGTGCTGCTTCTGGTGATGAACAAGAACCACGTCCCAAAAGAAAACGTTACCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCACACCCAGATGACAAGCAAAGGAAGGAGTTAAGCAGAGAATTAGGGTTAGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAAAGAACTCAAATGAAGACACAACATGAACGATCGGAGAATTCACAGCTTAGAGCAGAAAATGAAAAGCTTAGAACTGATAACATGAGGTATAGAGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGTGGTCCTACAGCTATAGGTGAAATGTCTTTTGATGAACATCATTTGAGGCTTGAAAATGGAAGGCTAAGAGAAGAGATCGACCGAATCTCAGCAATCGCAGCCAAGTACGTAGGAAAGCCGGTGGTAAACTATTCAAACATTTCACCATCTCTCCCACCTCGTCCAGAAATTGGTTTTGTTGGTAACAACCAAGGAATTGGTGGTATGGAAATGTATGGAACAAGTGGAGATATTCTAAGGTCAATCAGTGGACCTACTGAAGCAGATAAACCAATAATAATAGAATTAGCTGTTGCAGCTATGGAAGAACTTATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAAGTACTACACTTGATGGAGCTGGTACTGTTCTTAATGAAGATGAATATGTTAGGTCATTTCCTCGCGGAATTGGACCTAAACCTAACGGTTTTAAGTGTGAAGCTTCTAGAGAAACTAGTGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAACAGTGTTTGCTGGTATTGTTTCAAGAGCTATGACTGTGGAAGTGTTGTCAACTGGTGTGGCAGGAAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTTCCATCACCACTTGTGCCAACTAGAGAGACTTACTTTGTAAGGTATTGCAAACAACATACTGATGGGACATGGGCAGTTGTGGATGTTTCTTTGGATAATTTGCGCCCTAGTCCTACATCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCAAATGGCTACTCCAAGGTGACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGCACTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACTTTAGATCGACAATGTGAAAGACTTGCTAGCTCCATGGCAACAAACATTCCTACCGTAGATGTTGGCGTGATAACAAGCCAAGAAGGGAGGAAGAGTATGATGAAACTAGCAGAGAGAATGGTGATAAGTTTTTGTGGTGGAGTAAGTGCTTCAACAGCACATACATGGACAACATTATCTGGAACAGGAGCTGATGATGTCAGAGTGATGACACGTAAGAGTGTTGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCTAAACAAGTCTTTGATTTTCTTCGTGATGAAAACTCAAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTAGTCCAAGAAATGGCGCACATTGCAAATGGACGAGATACCGGAAATTGTGTGTCTCTCCTAAGAGTTAATAGTGCAAATTCAAGCCAGAGCAACATGTTAATATTACAAGAGAGTCTAACAGATTCAACAGGTTCATTTGTGATATATGCACCAGTAGACATTGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCGGGATTCGCTATCCTTCCCGATGGAAATGCAATTGGAAATGGTGAAAATGGAGGACAAGCTGCTGGTGGTGGTGGATCACTTTTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACTGCTAAACTTTCTCTTGGATCTGTTGCAACTGTTAATAGTCTTATTGCTTGTACTGTTGAGAGAATCAAAGCTTCTTTGTCTGGTGAAGGTGTTGCTTGA 2202 0.411 MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESATKSCSENHEGGAASGDEQEPRPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRTDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENGRLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPEIGFVGNNQGIGGMEMYGTSGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLSTTLDGAGTVLNEDEYVRSFPRGIGPKPNGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFAGIVSRAMTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRETYFVRYCKQHTDGTWAVVDVSLDNLRPSPTSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITSQEGRKSMMKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKQVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESLTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAIGNGENGGQAAGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKASLSGEGVA* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1405 733 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Tpr4g1405 733 Pfam START domain 251 471 IPR002913 GO:0008289
Tpr4g1405 733 SUPERFAMILY Homeodomain-like 53 119 IPR009057 -
Tpr4g1405 733 CDD homeodomain 61 120 IPR001356 GO:0003677
Tpr4g1405 733 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Tpr4g1405 733 SUPERFAMILY Bet v1-like 491 724 - -
Tpr4g1405 733 ProSiteProfiles START domain profile. 241 474 IPR002913 GO:0008289
Tpr4g1405 733 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Tpr4g1405 733 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 15 729 - -
Tpr4g1405 733 SMART START_1 250 471 IPR002913 GO:0008289
Tpr4g1405 733 Gene3D - 290 468 IPR023393 -
Tpr4g1405 733 MobiDBLite consensus disorder prediction 25 40 - -
Tpr4g1405 733 Coils Coil 118 145 - -
Tpr4g1405 733 CDD START_ArGLABRA2_like 245 470 - -
Tpr4g1405 733 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 729 IPR042160 -
Tpr4g1405 733 SMART HOX_1 60 123 IPR001356 GO:0003677
Tpr4g1405 733 SUPERFAMILY Bet v1-like 241 473 - -
Tpr4g1405 733 Gene3D - 49 136 - -
Tpr4g1405 733 MobiDBLite consensus disorder prediction 13 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1405 Tpr-Chr4 13708858 13716460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1405 1 730 Homeobox Transcription Factor Family AT1G05230 77.989 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr4g1405 START 7.7e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1405 K09338 - gmx:100782260 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1405 4 13708858 13716460 Tpr4g1405 4 13708858 13716460 ECH