Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1398 ATGTCTGAGTTTGACACAAACATCCCAACAACTTTTGACCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCCGGGACAAAAGAATATGTTCATGTCCGTGTACAGCAGCGTAACGGAAGGAAAAGCTTAACAACTGTTCAAGGGTTAAAGAAAGAGTACAGCTATAGCAAGATACTCAAGGATCTGAAGAAAGAATTCTGCTGTAATGGTACTGTTGTCGAGGACCCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGGAAGAATGTTTCTACTTTCCTTGTGCAGGCGAGAATCGTAAAAAAGGAGAATATCAAGATTCATGGTTTCTAA 342 0.4269 MSEFDTNIPTTFDPFAEANAEDSGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVEDPELGQVIQLQGDQRKNVSTFLVQARIVKKENIKIHGF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1398 113 Gene3D - 2 113 - -
Tpr4g1398 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 7 113 IPR005874 GO:0003743
Tpr4g1398 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Tpr4g1398 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Tpr4g1398 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Tpr4g1398 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Tpr4g1398 113 SUPERFAMILY eIF1-like 7 113 IPR036877 GO:0003743|GO:0006413
Tpr4g1398 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Tpr4g1398 113 MobiDBLite consensus disorder prediction 1 23 - -
Tpr4g1398 113 Pfam Translation initiation factor SUI1 28 100 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1398 Tpr-Chr4 13595461 13599146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1398 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 88.496 1.84e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1398 K03113 - gmx:100784390 220.705