Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1397 ATGGCTGACACAGAATCCTCCTCTAACAATGTTTCAGCTGATTCTAGAGATCAAAAATCTAGCCAAGATTCAAAACTTGAATTTTCTGCGGATGAGGAAATCCTTATTACTATGGTTTATAATCTGGTTGGGGAGAAGTGGTCATTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATAGAAAAGTATTGGAATTCAAGATACTCTACTAGCGAATGA 225 0.3733 MADTESSSNNVSADSRDQKSSQDSKLEFSADEEILITMVYNLVGEKWSLIAGRIPGRTAEEIEKYWNSRYSTSE* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1397 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Tpr4g1397 74 MobiDBLite consensus disorder prediction 1 26 - -
Tpr4g1397 74 SMART sant 24 72 IPR001005 -
Tpr4g1397 74 Gene3D - 27 70 - -
Tpr4g1397 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 74 IPR017930 -
Tpr4g1397 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Tpr4g1397 74 Pfam Myb-like DNA-binding domain 27 68 IPR001005 -
Tpr4g1397 74 MobiDBLite consensus disorder prediction 1 17 - -
Tpr4g1397 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 73 - -
Tpr4g1397 74 CDD SANT 27 67 IPR001005 -
Tpr4g1397 74 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC1 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1397 Tpr-Chr4 13591060 13592255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1397 28 69 MYB Transcription Factor Family AT4G09460 54.762 1.18e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g1397 Myb_DNA-binding 3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1397 - - jre:108985255 110.153