Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1392 ATGTTTGAACGGAAGCAGTTCAAGACAAGGTTATGCGCACTCTATCAGAAAGGTCGTTGCAATCGCCATAACTGTTCCTTTGCACATGGGAATGCTGAGCTTCGACGTTTTTCTTCCTCCTTTAACGTTAATGGAAGGAGGGACTATTTAGGTAATGACTTGAGGGATAAACTTGAGAGAAGGAATTTATCACCTCCAAGATATTCACCTCCAAGATATTCACCGGCTCGAGATGCAAGAGCTCGGCAGACTACTCGCGAATATAGTCCACCGAGGTCTCCGGAGAAAAAAAGTGACAGAAGATATAAGAGAAAACAGGGCATCAGTGGCCAAAGCGATATTTCTGGAAGTTTAAAAGTCTCTGATAGAATTATTGATCAAGTTAAAGAAGGAAAACTGCATTCCTCTGATTCTAGAAATACTCTTGAGGATCAGCTGAAGAAAGTACATTCCGATATCGACACTCTTGAGAACCGGAAATCCCAACTATCGGTCCGTCTAGATGAGAGTGTTCAAGAAGTGGATAGCCTTAATTCCAGAATTCAGGAACTTGAGGCTCAGTTAAACAAGGAGAATGGAGAGTATAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTCGAATGCACAATCATAATTTGGAGTTGCAAGATGAACTTAAGAGATCACAGGTCCGACTTCAAAGGTTTGGAGATCAGCTTTTCTCGGACATTTCTATAATTGGTGCTAATGAGGAAGATTTTAGCGTTGATATTGTAAGCAATGGTGAGAATACTAGTCTCCCTCCAATCACCAAACATAATTTGGAGCAGAATGGCGGATCTCCCTGCAGAAAAAGGCTGCATGGGGAACGAGATTCTGTGGAAAAGTTAAAACAAGATAAATCAAAAGTGGGGCATTTGGTTGAAACAGAAAGAAGCGGGAAGCGTTCTCGATTGTCTGCTCAAACGAATGACAAGGGTTGTGAGGAGGCCCCAGGCAATGGAATTGAAGTTATTAGGCACGTAGATCTTGAAGGAAAGCACAAGAAAGGAATATGGAATTCTTCTAACAACACTCATTCAGAAAAGCAGAAGGAATCCAGGATTGAAGTGCCATCAACCAGCATGGCAGCTCATGTGTTTGACGAGGAAGTTGATATTGAACATGATAATGGAACTGATATCGATGAAACTGCAAAGACAGAAAATGAGAATGCAGTGGCATTACAGGTGAAGGGCATACCTCTCATGCTTACCCCAGATTTGATTCCCCGTAGCAATTATTCACAGTATGAGGGTAAACACGAGAACGTGGATGTGGATGGTCTCGATGAAGAGGCAGCAGGATCACGCATGGACATGGTCTAA 1347 0.4202 MFERKQFKTRLCALYQKGRCNRHNCSFAHGNAELRRFSSSFNVNGRRDYLGNDLRDKLERRNLSPPRYSPPRYSPARDARARQTTREYSPPRSPEKKSDRRYKRKQGISGQSDISGSLKVSDRIIDQVKEGKLHSSDSRNTLEDQLKKVHSDIDTLENRKSQLSVRLDESVQEVDSLNSRIQELEAQLNKENGEYKRITSRIRKFVRMHNHNLELQDELKRSQVRLQRFGDQLFSDISIIGANEEDFSVDIVSNGENTSLPPITKHNLEQNGGSPCRKRLHGERDSVEKLKQDKSKVGHLVETERSGKRSRLSAQTNDKGCEEAPGNGIEVIRHVDLEGKHKKGIWNSSNNTHSEKQKESRIEVPSTSMAAHVFDEEVDIEHDNGTDIDETAKTENENAVALQVKGIPLMLTPDLIPRSNYSQYEGKHENVDVDGLDEEAAGSRMDMV* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1392 448 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 441 IPR045868 GO:0046872
Tpr4g1392 448 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Tpr4g1392 448 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 441 - -
Tpr4g1392 448 MobiDBLite consensus disorder prediction 56 116 - -
Tpr4g1392 448 Gene3D - 1 36 - -
Tpr4g1392 448 MobiDBLite consensus disorder prediction 79 107 - -
Tpr4g1392 448 Coils Coil 139 201 - -
Tpr4g1392 448 MobiDBLite consensus disorder prediction 287 321 - -
Tpr4g1392 448 MobiDBLite consensus disorder prediction 287 316 - -
Tpr4g1392 448 Coils Coil 446 448 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g1392 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1392 - - aprc:113858008 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1392 4 13521220 13529125 Tpr4g1392 4 13521220 13529125 ECH