Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1380 ATGTTAGTGAAAAGCCAAAACAAAGGGGATGGATCCAAGTCCCTCGCCGATACATTGGCAAAATGGAAAGAATACAATGCTCGACTTGAATCGAGCGGGGAAGCTGCGAAGCCAGTTAGGAAAGTTCCTGCCAAGGGATCGAGAAAAGGGTGTATGAAAGGTAAAGGAGGACCCGAGAATTCGCGCTGTAATTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATTAGGGAGCCAAACAGAGGAAACAGGCTCTGGTTAGGTACATTTCCAAATGCAGTCGGCGCTGCTCTTGCTTATGACGAAGCAGCGCGGGCAATGTACGGTGCTAGTGCGCGCCTGAACTTTCCTAATGTAGAAGTGTCCAATTTCTCTAATTTGGAATCTTTGAAAGATTGTGTAGATCAATCTGGTTTTGTAAAGACAGCATTGGAGAATACCGAGTCCAAGATATCGCCAGATAACGCTTGTGTAGATGCTGCTGAAGATGTTGACATGAAACATCTTTCCTTATCCTTAAGTGTGACTGTGAATCACGAGGAAAAAAGAGGGTGA 567 0.4533 MLVKSQNKGDGSKSLADTLAKWKEYNARLESSGEAAKPVRKVPAKGSRKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPNAVGAALAYDEAARAMYGASARLNFPNVEVSNFSNLESLKDCVDQSGFVKTALENTESKISPDNACVDAAEDVDMKHLSLSLSVTVNHEEKRG* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1380 188 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Tpr4g1380 188 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Tpr4g1380 188 MobiDBLite consensus disorder prediction 30 63 - -
Tpr4g1380 188 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Tpr4g1380 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 145 - -
Tpr4g1380 188 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Tpr4g1380 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 145 - -
Tpr4g1380 188 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Tpr4g1380 188 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Tpr4g1380 188 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Tpr4g1380 188 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1380 Tpr-Chr4 13349368 13351359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1380 2 134 AP2-EREBP Transcription Factor Family AT2G40350 56.934 6.91e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g1380 AP2 8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1380 - K09286 gmx:100499747 270.011