Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1373 ATGTCCAATAATAACATGAGAACTGTTTTTCTCTTCTTCAACCTGTATGTTTATTGGTTGCTAATATGTTCTTCATTGATGTGTTTAGCAGGAGATACTTTGAAAGCAGGCCAGAAGATAATAGCCAATGAAAATGAAACCATTCTTGTTTCAGCTGAAAAAATATTTGAACTAGGCTTCTTCACTCCAAACATCATCACAAGTGATTCACAAAGATACTTAGGTATATGGTATCACATACAAGAAGTATCAGAACAACCTCAGAAAAAAACAGTTGTATGGGTTGCAAACAGAGACAACCCTGTAGCTGTTAATTCAACTGGTGTTTTCCAAATAGCAGAAGATGGAAATCTTATTGTTGTAGACACATCTGGTAATAATATAACATACTGGTCATCCAATTCCAATGTAAAACACTCTTCTATTTCTTCGCCGAAAAACAGGACGGTGAAGCTTATGGATTCTGGTAACCTTGTGTTACTAGAAGATGATGAACAGAAGGAAGTAAAACTCTGGCAGAGTTTTGATAATCCATCTGATACATTCCTACCAGGAATGAAGATGGATAGGAATTTGAATCTAACAAGTTGGAAAAGTGCTGATGATCCAGGAAGTGGAAATTTCAGTTTTAAGATGGAACAAATTAGTGGGCTTGATCGTTTTAAGATCTTAAACTTCGATGAAATCTATTGGGAGAGCGAAGAGTACGGATCTTTGACTTATGATTCGAAGATTGATCAATCTGATGATATCAGCTTAGAGGTTTACAATCTGTTGACCAACTTCACTTTACCTATACTGAGAAAACTAATTTATATGAACACTTACGACAATACAAGGTTGTTTCTTGATTCTCAAGGAGTGATTCAGTGGGGGAACAATTTGTTGGTAGGTGGAAATTTATTGGTTAGGTGGAAACAGCCAAAAACCAAATGTTTCAGATATGATTTTTGCGGAAACTTTGCTAGCTGTAACGACGATGATTTTGAGCCATGCAAATGTTTACCTGGATTCTATGATGATTACTCAGTAGATGGAGATTCTTCTCTACGAGACAAGCTACGTTGTGCGCGGAGAAAATTAGCATCATGTACCAGAAATGATACGGTGTTTCTAAACTTGACACTGATTAAAACAGGAAGACCTGATGAAAAATTCAATGTGGAATATGTAGAAGATTGCAAATCTATATGCCTCGGGAGATGTCCACAGTGCCAAGCTTACTCATATGCTCCACCCTCGACTGATCGCCAGCGTATTGGTCTTGTTCCTTCAAACTGCTGGATCTGGACACACAATTTAACTACTCTTAAAGAAAACTACACCGATGGGGATGATGATCGTAGACTCTTTGTCTTAGTTGACAAATCAGATAAAGAACCAACGCCAAGAACTTGTGAGCCTTGTGGTACAAACAATGTCCCTTATCCGCTTAGTACCGGATCCAATTGTGGAGACCTCAAATACTTAAACTTTAAATGCAACACTTCGACAGGTCAGCTTAACTTCATCACAAAGAACGAAGTTAGTTACAGAGTTATCCGTGTAAAACCTATTTCAAGAAAATTTACCATTCATAATGAGGATGATTCTTTTTATCGAAGTTGTGGTGATGGATCTGACCGCACAGGAAATCTGAAGGTTTCTTCCCCGTTTCACAGTGACAATTCGTGCTTGGAACAAGTGGAAGTTAGTTGGGAGCCACCTTCCGAAGAACCTGTTTGTGATAACTCTTTTGATTGTCACGGTTGGAAAAATTCTACTTGCAGTAAAGGAAATAAGTGTCTTTGCAATGCAAACTATCATTGGAGTGGCAAGATTTTAAGTTGTACCGACAGTTTTTTAGAACCTACATCGTCTCCTAATGCTACAAATGAGTCAACAAAAGGAAACTCCAAAAGCTCACTCCCTTTGATTCTTGGCTTAACTCTTACTGCAGTGATTATTCTAGCTTGCATAATTATTTTTGCTTATGTATGCAGACGGAGAATAGTTCATATCGTTAAAAAAGAGAAAGAAAGCATACAGAGAAATATTAGAGGGGGCTTTTATGACAGTGAAAGACACGTGAAGGACTTGATAGACATGGAGGGATTGGAAGAGAATGACAATGAAGGAATTGAGGTTCCTTATTTCGATTTCGAGAGCATAGTAATGGCTACAGATGACTTTTCAGATGCAAATAAGCTTGGAAGAGGTGGTTATGGGCCAGTGTACAAGGGTAAACTTCAAGGTGGTCAAGAAATTGCGGTAAAGAGGCTTTCAAGTGTTTCTTCACAAGGATTACAAGAATTCAAGAATGAGGTTGTTTTAATTGCAAAACTTCAACATCGAAATCTTGTTAAATTACGGGGATATTGCGTTAAAGGAGAAGAAAAAATTCTACTGTATGAATACATGCCTAACAAGAGCCTGGACTTATTGATCTTTGATCCTACAAAAAGCATAATTTTGGATTGGCAAATGCGGTTTGATATAATTCTTGGAATTGCTCGTGGAATGCTCTATCTTCATCAAGACTCGAGATTGAGAGTTATTCATCGAGATTTAAAAACTAGCAACATTCTCCTAGATGAGGAGATGCAACCAAAGATATCAGATTTTGGTTTGGCAAGAATATTTGGAGGAAAAGAAACCGAGGCAAACACAGAGAGGGTTGTTGGTACATATGGATACATGTCTCCCGAGTATGCATTGGATGGACAATTCTCTACAAAATCAGATGTTTTCAGTTTTGGTGTTGTCTTGCTCGAGATCATAAGTGGAAAAAAGAACACAGGATTCTTTCAAACAAAAGAAATTTCAAGTCTTTTGGGTTATGCTTGGACACTATGGCAAGAGGAAAAGTTGCAAGATTTATTAGACCAATCTATCTGTGATACTTACAATGCTAACCAATTTATTCGGTGTTCACAAATCGGACTCTTATGCGTACAAGATGAACCAGGAGATCGACCAAACATGTCAAATATTGTAACAATGCTAGACAATGAAACTACAACGCTCCCAACCCCTAAACAACCAACCTTTTTTATGCGAAAAAACCTATCTAACACGGGTTCTTCAAGTCTGCAGCATGAAAGTAGCATTCAAGAAGGCCGATAG 3105 0.3771 MSNNNMRTVFLFFNLYVYWLLICSSLMCLAGDTLKAGQKIIANENETILVSAEKIFELGFFTPNIITSDSQRYLGIWYHIQEVSEQPQKKTVVWVANRDNPVAVNSTGVFQIAEDGNLIVVDTSGNNITYWSSNSNVKHSSISSPKNRTVKLMDSGNLVLLEDDEQKEVKLWQSFDNPSDTFLPGMKMDRNLNLTSWKSADDPGSGNFSFKMEQISGLDRFKILNFDEIYWESEEYGSLTYDSKIDQSDDISLEVYNLLTNFTLPILRKLIYMNTYDNTRLFLDSQGVIQWGNNLLVGGNLLVRWKQPKTKCFRYDFCGNFASCNDDDFEPCKCLPGFYDDYSVDGDSSLRDKLRCARRKLASCTRNDTVFLNLTLIKTGRPDEKFNVEYVEDCKSICLGRCPQCQAYSYAPPSTDRQRIGLVPSNCWIWTHNLTTLKENYTDGDDDRRLFVLVDKSDKEPTPRTCEPCGTNNVPYPLSTGSNCGDLKYLNFKCNTSTGQLNFITKNEVSYRVIRVKPISRKFTIHNEDDSFYRSCGDGSDRTGNLKVSSPFHSDNSCLEQVEVSWEPPSEEPVCDNSFDCHGWKNSTCSKGNKCLCNANYHWSGKILSCTDSFLEPTSSPNATNESTKGNSKSSLPLILGLTLTAVIILACIIIFAYVCRRRIVHIVKKEKESIQRNIRGGFYDSERHVKDLIDMEGLEENDNEGIEVPYFDFESIVMATDDFSDANKLGRGGYGPVYKGKLQGGQEIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVKLRGYCVKGEEKILLYEYMPNKSLDLLIFDPTKSIILDWQMRFDIILGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLARIFGGKETEANTERVVGTYGYMSPEYALDGQFSTKSDVFSFGVVLLEIISGKKNTGFFQTKEISSLLGYAWTLWQEEKLQDLLDQSICDTYNANQFIRCSQIGLLCVQDEPGDRPNMSNIVTMLDNETTTLPTPKQPTFFMRKNLSNTGSSSLQHESSIQEGR* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1373 1034 Gene3D - 25 176 IPR036426 -
Tpr4g1373 1034 Gene3D Transferase(Phosphotransferase) domain 1 800 1007 - -
Tpr4g1373 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Tpr4g1373 1034 ProSiteProfiles Protein kinase domain profile. 724 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1373 1034 CDD B_lectin 45 178 IPR001480 -
Tpr4g1373 1034 ProSiteProfiles PAN/Apple domain profile. 364 455 IPR003609 -
Tpr4g1373 1034 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 25 1023 - -
Tpr4g1373 1034 Pfam D-mannose binding lectin 91 193 IPR001480 -
Tpr4g1373 1034 Pfam S-locus glycoprotein domain 273 339 IPR000858 GO:0048544
Tpr4g1373 1034 Gene3D Phosphorylase Kinase; domain 1 690 799 - -
Tpr4g1373 1034 SMART serkin_6 724 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1373 1034 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 203 IPR036426 -
Tpr4g1373 1034 SUPERFAMILY Protein kinase-like (PK-like) 706 1015 IPR011009 -
Tpr4g1373 1034 SMART blect_4 39 178 IPR001480 -
Tpr4g1373 1034 ProSitePatterns TonB-dependent receptor proteins signature 1. 1 53 IPR010916 -
Tpr4g1373 1034 ProSiteProfiles Bulb-type lectin domain profile. 25 173 IPR001480 -
Tpr4g1373 1034 Pfam Protein tyrosine and serine/threonine kinase 728 995 IPR001245 GO:0004672|GO:0006468
Tpr4g1373 1034 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 1023 - -
Tpr4g1373 1034 CDD STKc_IRAK 730 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1373 Tpr-Chr4 13273262 13277828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1373 712 1013 Receptor kinase-like Gene Family AT4G23140 58.766 2.84e-124 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr4g1373 PK_Tyr_Ser-Thr 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1373 - - mtr:MTR_0148s0080 1463.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1373 4 13273262 13277828 Tpr4g1373 4 13273262 13277828 ECH