Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1363 ATGGTTAGAACTCCTATTTGTGACAAAAGTGGAATGAGGAAAGGAACTTGGACTGCTGAAGAAGATAGGAAATTAATAGCTTATGTAACTAAATATGGTTGCTGGAATTGGCGCCAACTTCCTAAGTTTGCAGGTCTTGCAAGATGTGGGAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGGCCTAATATCAAAAGAGGGAATTTCACTCAACAAGAAGAAGACTTGATTGTCAAAATGCATAAAAAACTTGGCAATAGATGGTCAACTATCGCGGCGGAGTTACCTGGAAGAACAGATAATGAAGTGAAGAATCATTGGCATACTTCTCTTAAGAAGAGAGTTCAACACAATACAATCACAAATATTGAAGAAACCAAAGTTACCAAATCAAGAGATGTTGCCATTTTCCAAGTTACTACTACTCCAGCTAGTCCTCAAGACACCAATAGCCCATTATCCCCATTTTCATCATCAAGTGAATTATCTTCCACAACATATTCCAATCACAGTTCCACTCATGATTTTGATGATTTTGGTTTTCTTGATGGATTTATAGAATCTATGGATCAAACTTTTTGGCTGGATGACCTTTCCATAATTGTGCAAGACAATGCTAGTTGTGATTTTCAAAATCAAGATACTACTAATTTAGTGTCTCCTTATCATTGGTCTAATGAAAGTTTGGCATTGGATAATTACATTGCCAGCTTTCTAGATTCGTACAAAGAGTCAACAGTTGATAGTTTTTGGGCACAACCATATTAA 771 0.3606 MVRTPICDKSGMRKGTWTAEEDRKLIAYVTKYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNFTQQEEDLIVKMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRVQHNTITNIEETKVTKSRDVAIFQVTTTPASPQDTNSPLSPFSSSSELSSTTYSNHSSTHDFDDFGFLDGFIESMDQTFWLDDLSIIVQDNASCDFQNQDTTNLVSPYHWSNESLALDNYIASFLDSYKESTVDSFWAQPY* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1363 256 CDD SANT 69 112 IPR001005 -
Tpr4g1363 256 CDD SANT 16 61 IPR001005 -
Tpr4g1363 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr4g1363 256 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Tpr4g1363 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr4g1363 256 SMART sant 13 63 IPR001005 -
Tpr4g1363 256 SMART sant 66 114 IPR001005 -
Tpr4g1363 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr4g1363 256 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr4g1363 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr4g1363 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr4g1363 256 Gene3D - 68 137 - -
Tpr4g1363 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 204 - -
Tpr4g1363 256 Gene3D - 14 66 - -
Tpr4g1363 256 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1363 Tpr-Chr4 13185067 13186452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1363 1 195 MYB Transcription Factor Family AT1G06180 48.718 1.21e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g1363 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1363 K09422 - gmx:778087 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1363 4 13185067 13186452 Tpr4g1363 4 13185067 13186452 ECH