Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1360 ATGGTCAGAGCACCTTATTTTGATGAAAATGGAACAAAGAAAGGTGCATGGAGTATGGAAGAGGATCAAAGGCTTATTGCTTACATTGAAAGGCATGGTCATCCTAATTGGCGTCAACTTCCCAAAGTTGCCGGTTTGGCAAGATGTGGAAAGAGTTGTAGGCTACGTTGGATGAATTACTTAAGGCCAAATCTAAAACGAGGGAACTATACACAAAAGGAGGAACAAATGATCATGGAATTGCACAAAAAGCATGGAAATAAATGGTCTCTTATTGCCGAAAGTCTACCCGGAAGATCAGACAATGAAATAAAGAATTACTGGCACAGTCACCTAAAGAAAATCTCACGGCACAATGAGACCAACCTTATTAAAGAGATTCAAAAGACAAAAACAACAAGTGAGGATGTTAGTGATGATTCCAACCACATTTTGGAAAGTTCAACTTCAATGTCTTCTAGTCATGTGGAATTAAACATGACCTTGTATAGAAAAGAAGATAGTGTTGCTTCTTGGGAAATATGGGATGGATTCAGCAACAATTTTTGGACTGAACCATTTATTTCAGAAAATGCATTGGGTCAGGATTACTCTCCCGTTTCATGGTATGGATCAGAGGCAGAGGATCCATTTTTCATATGGTAG 645 0.386 MVRAPYFDENGTKKGAWSMEEDQRLIAYIERHGHPNWRQLPKVAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEQMIMELHKKHGNKWSLIAESLPGRSDNEIKNYWHSHLKKISRHNETNLIKEIQKTKTTSEDVSDDSNHILESSTSMSSSHVELNMTLYRKEDSVASWEIWDGFSNNFWTEPFISENALGQDYSPVSWYGSEAEDPFFIW* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1360 214 CDD SANT 69 112 IPR001005 -
Tpr4g1360 214 CDD SANT 16 61 IPR001005 -
Tpr4g1360 214 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr4g1360 214 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr4g1360 214 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr4g1360 214 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr4g1360 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr4g1360 214 Gene3D - 69 115 - -
Tpr4g1360 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 204 - -
Tpr4g1360 214 PANTHER MYB TRANSCRIPTION FACTOR 1 204 - -
Tpr4g1360 214 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tpr4g1360 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr4g1360 214 SMART sant 66 114 IPR001005 -
Tpr4g1360 214 SMART sant 13 63 IPR001005 -
Tpr4g1360 214 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1360 Tpr-Chr4 13130804 13132871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1360 1 204 MYB Transcription Factor Family AT2G31180 43.478 3.14e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g1360 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1360 K09422 - gmx:100782270 303.908