Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1350 ATGAGTTGGTCTTCCTTTTATAACACAGCCTCAAGGGTTTTTCATGAGTATCCATCTTGGTCCAAGGCTGTTGTTGTATGCACATTCATTAGTGGTGGAGGTATAGTGGCATATGGTGATGGCAGAGCAGCATATAGTGATTCTGGTGATCAAATCCCAAAAAAGAAAGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTGTGAAAAACATGAAAAACTCTTCTTATGATATTCATGTGGTTTCACCTCGTAATTATTTTGCATTCACTCCTTTGCTACCAAGTCTCACTTGTGGCACAGTCGAGGCACGGAGCATTATCGAACCAATTCGAAATATCAGCAGAAAGAGTGGTATAGATATTGAATTCAGTGAAGCTGAATGCTATAAGATTGATCCAAAGAACAACAAAGTTTACTGCAGAGCTGCTGCTCAAGACAAAAAGCTTGGTGGCATGGATGAATTTTCCATTGATTATGATTACTTAGTAATAGCTATGGGAGCTCGTTCTAATACCTTTAACACGCCCGGTGTTCAGGAGCATGCCTACTTTTTGAAGGAAGTGGAAGATGCTTTAAGAATCCGGAAAAAAGTGATTAACCTTTTTGAAAGAGCAAGTCTCCCTTCTGTACCGGTGGAAGAGAAGAAAAAGCTTCTAAGTTTTGTAGTTGTTGGTGGTGGTCCAACTGGTGTAGAGTTTGCTGCAGAACTACATGACTTAGTGCATGAAGATTTGTCGAAATTATATCCTTCTCTTATAGACCATGTCAAGATTACTCTCCTCGAGGCGGGCGATCATATCTTAAACATGTTTGACAAGAGAATAACAGAATTTGCTGAAGGAAAGTTCAAAAGAGATGGAATTGATGTGAAATTGGGATCTATGGTTGTGAATGTTGGTGAAAAAGATATATCATCCAAAGAAAGAAGTGGTCAAGTTGTTACTATACCTCATGGGATGGTAGTTTGGTCAACTGGTATCGGTGCTCGTCCTGAAATCCTCGATTTCATGAAGCAACTTGGCCAGATTAATCGGCGTGCATTGGTCACCGATGAATGGCTAAGGGTGGAAGGGTGTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAACGTAGAGTTATGGAAGATATAGCAGTGATATTTAGTAAGGCGGACAAAAACAATTCCGGAATGTTAGATCTTAAAGAATTTCAAAACGTTGTTGACGACATTATCGAGAGATATCCACAAGTTGACATTTATTTAAAGAAGAATCAAATGAAAGACATGGCTACTTTGCTAAACAAATCTCAGGAAAGCCCTGCCACTACTGTGGACATTGAATACTTTAAACAAGCTGTTTCCAAAGTTGATTCTCAGATGAAAAATCTTCCGGCAACAGCTCAGGTAGCTGCTCAACAAGGAGCCTATCTTGCAGACTGTTTCAATCGCATGGAATTGTGCGAGAGATATCCAGAAGGTCCTTTAAGGTTTAGGGGAACAGGACGCCATCGGTTTCATGCCTTCAGGTACAAACATTTTGGACAATTTGCTCCTCTTGGTGGAGAACAAACTGCAGCTCAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGCCAATGGTTGTGGTATTCAGTATATGCAAGCAAACTAGTGAGCTGGAGAACAAGAGCTTTGGTGATATCTGACTGGGGAAGGAGATTTGTATTTGGCAGGGACTCAAGTGAAATATGA 1731 0.4079 MSWSSFYNTASRVFHEYPSWSKAVVVCTFISGGGIVAYGDGRAAYSDSGDQIPKKKVVVLGTGWAGTSFVKNMKNSSYDIHVVSPRNYFAFTPLLPSLTCGTVEARSIIEPIRNISRKSGIDIEFSEAECYKIDPKNNKVYCRAAAQDKKLGGMDEFSIDYDYLVIAMGARSNTFNTPGVQEHAYFLKEVEDALRIRKKVINLFERASLPSVPVEEKKKLLSFVVVGGGPTGVEFAAELHDLVHEDLSKLYPSLIDHVKITLLEAGDHILNMFDKRITEFAEGKFKRDGIDVKLGSMVVNVGEKDISSKERSGQVVTIPHGMVVWSTGIGARPEILDFMKQLGQINRRALVTDEWLRVEGCDNIYALGDCATINQRRVMEDIAVIFSKADKNNSGMLDLKEFQNVVDDIIERYPQVDIYLKKNQMKDMATLLNKSQESPATTVDIEYFKQAVSKVDSQMKNLPATAQVAAQQGAYLADCFNRMELCERYPEGPLRFRGTGRHRFHAFRYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVISDWGRRFVFGRDSSEI* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1350 576 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Tpr4g1350 576 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Tpr4g1350 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Tpr4g1350 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Tpr4g1350 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Tpr4g1350 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 349 371 - -
Tpr4g1350 576 PANTHER NAD(P)H DEHYDROGENASE B2 73 576 - -
Tpr4g1350 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
Tpr4g1350 576 Gene3D - 442 575 - -
Tpr4g1350 576 Gene3D - 48 434 - -
Tpr4g1350 576 PANTHER NADH DEHYDROGENASE 73 576 IPR045024 GO:0003954|GO:0006116
Tpr4g1350 576 SUPERFAMILY FAD/NAD(P)-binding domain 215 374 IPR036188 -
Tpr4g1350 576 SUPERFAMILY EF-hand 371 462 IPR011992 -
Tpr4g1350 576 SUPERFAMILY FAD/NAD(P)-binding domain 54 274 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1350 Tpr-Chr4 13015671 13020362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1350 5 576 Chloroplast and Mitochondria Gene Families AT4G21490 67.474 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1350 K03885 - gmx:100820044 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1350 4 13015671 13020362 Tpr4g1350 4 13015671 13020362 ECH