Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1349 ATGACGATTGCTTCCTTCTTCATCAGAGCCTCTAAGGCTATAAACAACCACCCTTTCTGCTCCGGCCTTCTTCTTCTCTGCACTGTCAGCGGCGGAGGTGTGGTGGCACTCTCAGAATCACAATCAGAAGCTCAACGTTCTAATATTGAAGATCATCAGCCCCGAAAAAAGAAAGTTGTGGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTCAAGGGTTTGGATGCTTCATTATATGATGTTCAAGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTACCGAGTGTCACTTGTGGAACAGTTGAAGCACGAAGCGTTGTAGAACCGATCCGAAACATCATTCAAAAGAGTAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTAATGCTGCAGACAAAAAGGTTTTTTGTCGGTCTAATATTGAAAACTTAGTGGGAAGTGGTGATTTTTCTCTGGACTATGACTTCTTGGTTGTATCAGTAGGAGCACAAGTAAATACTTTTAATACCCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGAATGTCGAGGATGCTCAAAAGATCAGACTATCTGTGATAGATTGTCTTGAGAAGGCTGTTCTTCCTAGTCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGAGGACCAACTGGTGTCGAATTTGCTGCAGAGCTGCATGATTATATCCAAGAAGATTTGATCAACTTATATCCAACCGTTAAAGATAAAGTGAAGATAACATTAATTCAATCTGGAGATCACATCTTGAATATGTTCGATGAAAGAATAAGTTCGTTTGCTGAGCAGAAGTTTAGGAGAGATGGTATAGAAGTTCAAACGGGATGCCGGGTTTTGAGTGTTAATGACAAGGAGATTACAATGAAGGCGAAATCAACAGGAGCGGTTTCCTCTGTGCCACATGGATTGATTATCTGGTCCACCGGAATTTCTACTCTTCCAGTTATACGGGACTTTATGGAAGAAATTGGTCAGGTTAAAAGGCATGTACTTGCAACTGATGAATGGTTGAGAGTACATGGATGTAAAGATGTGTTTGCAATTGGTGATTGTTCATCAATAAATCAACGTAAAATCATGGATGATATCTTGGACATATTTAAGGCTGCAGACAAAAATAACTCTGGTACCTTAACTGTAGAAGAGTTCGCAGAAGTGATGGATGACATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAACCATATACTTGATTTGAGGGTTCTGTGGAATGACCCAGAAGGGAATGAAAGAAAAGAAATAGACATAGAAGGGTTTAAACGGGCCCTTTCTTTCGCAGATTCACAGGTGAAGACTCTTCCAGCAACTGCACAGGTTGCGGCTCAACAAGGTGCATATCTAGCTAGTTGCTTTAACCATATTGATCTTTGTTTAGACCATCCAGAAGGACCTCGACGATTTTCAGGATCCGGACATCATATGTTTCGTCCCTTCCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGCGGGGAGCAAGCAGCAGCAGAACTTCCTGGAGATTGGGTTTCCATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAACAAGTGAGCTGGCGCACACGATATTTGGTCGTGTCTGATTGGACTAGAAAATTCATATTTGGAAGGGATTCAAGTCGAGTTTGA 1734 0.4129 MTIASFFIRASKAINNHPFCSGLLLLCTVSGGGVVALSESQSEAQRSNIEDHQPRKKKVVVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRNIIQKSKGEIKFWEAECVKINAADKKVFCRSNIENLVGSGDFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKNVEDAQKIRLSVIDCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDKVKITLIQSGDHILNMFDERISSFAEQKFRRDGIEVQTGCRVLSVNDKEITMKAKSTGAVSSVPHGLIIWSTGISTLPVIRDFMEEIGQVKRHVLATDEWLRVHGCKDVFAIGDCSSINQRKIMDDILDIFKAADKNNSGTLTVEEFAEVMDDIILRYPQVEYYLQKNHILDLRVLWNDPEGNERKEIDIEGFKRALSFADSQVKTLPATAQVAAQQGAYLASCFNHIDLCLDHPEGPRRFSGSGHHMFRPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1349 577 Gene3D - 46 404 - -
Tpr4g1349 577 Gene3D - 436 577 - -
Tpr4g1349 577 PANTHER NADH DEHYDROGENASE 52 577 IPR045024 GO:0003954|GO:0006116
Tpr4g1349 577 SUPERFAMILY EF-hand 338 461 IPR011992 -
Tpr4g1349 577 SUPERFAMILY FAD/NAD(P)-binding domain 221 375 IPR036188 -
Tpr4g1349 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
Tpr4g1349 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Tpr4g1349 577 SMART efh_1 382 410 IPR002048 GO:0005509
Tpr4g1349 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 377 IPR023753 GO:0016491
Tpr4g1349 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Tpr4g1349 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Tpr4g1349 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Tpr4g1349 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Tpr4g1349 577 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 52 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1349 Tpr-Chr4 13007642 13013685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1349 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 61.856 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1349 K03885 - gmx:100793566 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1349 4 13007642 13013685 Tpr4g1349 4 13007642 13013685 ECH