Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1335 ATGGCTCCCCCAAAATCTAAAGTAAAACGAGTGTTGTTCCTATGTTTCTCTCTTCTTCGGATGTCCATTGCGGACGATGGTGCTTTCATGTCAAAGCTATCAAAATCCCTAAGTCCTACCCTGTTAGGTTGGTCAGCGAGCAGCTCCTTTTGCACTTGGAATGGTGTAAAATGCGACATAACCAACCGTGTAACATCTATCGACCTTGCTTATAAGTCACTCGATGGTACACTTCCTTCGAATCTCAACTCACTTTCCAAACTCACCTCCCTGTTTCTCCAATCCAATTCTCTCTCCGGTCCATTACCCTCACTCGCCAACCTCACCATGCTTCAAACAATTTCCCTTGGCGGGAACAACTTCTCCTCCATCCCTGACGGTTGCTTCCAAGGACTAACCAGTCTCCAGAAACTCTCCATGGCCAGCAACATCAACCTCGCTCCATGGATGTTTCCCACCGAGTTGTCACAGTCTTCCAACCTCCTCTCACTTGACCTCGGAAGCACTAACCTTGTAGGTACCTTGCCGGATATATTTAATTCTTTAGTCAGTTTGCAGGACCTCAATCTTTCATATAACAAACTAACCGGGGATTTGCCTAAAGGTGTATCATTCGATCTTGATGGGACGATTAATAGCTTCTGTCAAAACACTTCTGGACCTTGTGATCCACGCGTCACTACTTTGCTCCATGTTGCCAAAGATTTCGGGTATCCACTTCAATTGGCAGATTCTTGGAAAGGGAACAATCCTTGTCAAGATTGGAGTTTCATTGTGTGTTCAGCCGGGAACATTATTACAGTGAACTTAGCCAAGCAGAAATTGGAGGGAACCATTTCACCTGCATTTGCAAATTTAACTGATTTGAGGAACTTGTATTTGGGTGATAACAATTTGACAGGTTCAATACCTCAGAGCTTGACAACTTTGCTGCATCTTCAGGTTCTTGATGTATCTAACAACAATCTATCTGGAGAGATTCCTCAATTCTCATCTATGACGATATTCATTTCAACCGGTAATGTTTTGCTTCAACTTGGAAGTCTGTATAAAAACACAACCGCTTCTGTGCCGTTGCTTAAAAACACAGCCGCTTCTTCTCCGTTGCTGGCTTGGATTCTAGGTGAGTCTGGTGATTTTTATGTTTATGAGGATGAACATCATTGGTTTGGTGTAGGAGCTATACTATTTATTGTGATTATTTGTAGAGGTAAGCGATATCTAAGCTTAGTAAAAACAAGGATCTTCAAGACACCAAGAATATTTATTGATCACGATATTGAGGATTTCATAAAAAGATATAATTTGTCAGTGCCGAAGCAGTATAGTTATGCAGAAGTGAAAAGGTTCACCAACTCATTTCGAGATAAATTGGGTCAAGGAGGATATGGTGTTGTGTACAAAGCCAGTTTACCTGATGGTCGTCATGTTGCGGTGAAAGTGATAAGCAAGTGTAAGGGAAATGGAGAAGAATTTATAAATGAAGTTGCAAGCCTAACTAAAACATCACATGTGAACATTGTCTCACTTTTGGGTTTTGGTTATGACAAGAACAAAAGAGCATTGATATATGAACTCATGTCCAATGGATCATTAGATAAGTTCATATATCGAAGTGGATTTCCGAATGCTATTTGTGATTTGGATTGGAACACATTGTTCCAAATTGTACTTGGCATTGCTCGAGGACTAGAGTACTTACATCAAGGTTGTATTTCAAGAATTTTACATCTTGATATCAAACCTCAAAATATTCTTTTAGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGTTTGGCTAAAATATGTCAAAAGAAAGAGAGTATTGTGTCCATGCTTGGGACAAGAGGAACTATAGGCTACATAGCACCAGAAGTATTAAGTCGAGCATTCGGTGGAGTTTCTTCTAAATCTGATGTATACAGTTATGGCATGTTAATTCTTGAAATGACGGGAGGAAGAAAGAATTATGACACTGGAGGGTCTCATACGACCGACATGTACTTCCCAGATTGGATATATAAGGATCTTGAGCAAGGTACTACTCATTTAAATCGTTCGACAATCTCAGAAGAAGAAAATGATATGGTGAAAAAGATTACTATGGTGAGTTTGTGGTGCATTCAAACGAATCCATCGGACAGACCACCAATGAGTAAAGTAATAGAAATGCTACAAGGACCACTTCATTCAATGTCTTATCCTCCAAAGCCTGTCTTATTTTCTCCAAAAGGGCCATCGTTACAATTGTCAGATATGTCTTCCAGTAATTTTAACAACTCAAATTCAATTATGATAGAGTAG 2307 0.3971 MAPPKSKVKRVLFLCFSLLRMSIADDGAFMSKLSKSLSPTLLGWSASSSFCTWNGVKCDITNRVTSIDLAYKSLDGTLPSNLNSLSKLTSLFLQSNSLSGPLPSLANLTMLQTISLGGNNFSSIPDGCFQGLTSLQKLSMASNINLAPWMFPTELSQSSNLLSLDLGSTNLVGTLPDIFNSLVSLQDLNLSYNKLTGDLPKGVSFDLDGTINSFCQNTSGPCDPRVTTLLHVAKDFGYPLQLADSWKGNNPCQDWSFIVCSAGNIITVNLAKQKLEGTISPAFANLTDLRNLYLGDNNLTGSIPQSLTTLLHLQVLDVSNNNLSGEIPQFSSMTIFISTGNVLLQLGSLYKNTTASVPLLKNTAASSPLLAWILGESGDFYVYEDEHHWFGVGAILFIVIICRGKRYLSLVKTRIFKTPRIFIDHDIEDFIKRYNLSVPKQYSYAEVKRFTNSFRDKLGQGGYGVVYKASLPDGRHVAVKVISKCKGNGEEFINEVASLTKTSHVNIVSLLGFGYDKNKRALIYELMSNGSLDKFIYRSGFPNAICDLDWNTLFQIVLGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSMLGTRGTIGYIAPEVLSRAFGGVSSKSDVYSYGMLILEMTGGRKNYDTGGSHTTDMYFPDWIYKDLEQGTTHLNRSTISEEENDMVKKITMVSLWCIQTNPSDRPPMSKVIEMLQGPLHSMSYPPKPVLFSPKGPSLQLSDMSSSNFNNSNSIMIE* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1335 768 Pfam Leucine rich repeat N-terminal domain 28 59 IPR013210 -
Tpr4g1335 768 Pfam Leucine rich repeat N-terminal domain 228 261 IPR013210 -
Tpr4g1335 768 SUPERFAMILY L domain-like 44 329 - -
Tpr4g1335 768 Pfam Protein kinase domain 456 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1335 768 Gene3D Transferase(Phosphotransferase) domain 1 527 735 - -
Tpr4g1335 768 Pfam Leucine rich repeat 106 143 IPR001611 GO:0005515
Tpr4g1335 768 SMART LRR_typ_2 108 131 IPR003591 -
Tpr4g1335 768 SMART LRR_typ_2 286 310 IPR003591 -
Tpr4g1335 768 SMART LRR_typ_2 182 206 IPR003591 -
Tpr4g1335 768 Gene3D Phosphorylase Kinase; domain 1 426 526 - -
Tpr4g1335 768 ProSiteProfiles Protein kinase domain profile. 452 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1335 768 Gene3D Ribonuclease Inhibitor 224 344 IPR032675 -
Tpr4g1335 768 PANTHER RUST RESISTANCE KINASE LR10-RELATED 27 766 IPR045874 GO:0004672
Tpr4g1335 768 SMART serkin_6 452 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1335 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Tpr4g1335 768 ProSitePatterns Protein kinases ATP-binding region signature. 458 480 IPR017441 GO:0005524
Tpr4g1335 768 PANTHER TYROSINE KINASE FAMILY PROTEIN 27 766 - -
Tpr4g1335 768 ProSiteProfiles Leucine-rich repeat profile. 312 334 IPR001611 GO:0005515
Tpr4g1335 768 SUPERFAMILY Protein kinase-like (PK-like) 434 726 IPR011009 -
Tpr4g1335 768 Gene3D Ribonuclease Inhibitor 27 219 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1335 Tpr-Chr4 12902556 12906015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1335 440 763 Receptor kinase-like Gene Family AT5G38280 58.308 5.63e-130 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr4g1335 Pkinase 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1335 - - cam:101489592 711.064