Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1325 ATGAAGAGTGAAAAATCGACCGAAGATAAAAAGAGTGTTGATGAGATTACCAAGGTGATTAATGAAATTAAAAGTAAACAATGTGAGATGGAAAAGGGAAAGGAAAAAATGTTTGTTGAAGATGTTTCCATGCAACATAGTCCTCTCAAGAAGATTTGTATCTCTCAACACCAAAACACAAATCAATCATCCTCTCATCAAATTCCTTCATCTAAAATTGTTTTCCCTTTTGCTTTTGAAGGTTCTCAATATCCAATATCATTCCCACACAAATCAAGAACAACAAATTTTTTGCCTCCTTTTTCTCCACCTCTTCACCCAACATCACCCTTATCAGCTCCTAATTCTGTTTTACCTCGCCAACGACAACAGATTCAGAATAAGCAGCTTCTTAGGCCTCAAGCGCGGCCTTTGAATGCTGGAAAACTGTATAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCTCGAAATAGAACTCGTCTCTGGCTTGGAACATTTGACAATGCTGAAAATGCTGCCATGGCATATGATCGCGAGGCTTTTAAGCTAAGAGGAGAAAATGCTAAGCTAAACTTCCCTGAACTCTTCCTTAACAAAGATAAACCACCAACATCATCATCATCATCATCCACAATAGCTCAAACTCCGTCTGCTCCTTCGCTACATGAAAGTTCGAGTTCAACATCAACAAAATTCCAGAACCCAAATCAACCAGAATCGATTCATGACAAGTATAGCTTGCAAGCTATCAATGATTCTAAAACCGGGGAAAATAATTCACAGCTGGTTTTGGGAGAAATGGCTGGTTGGTTGGAGGCAATTCCAGCAGGTTGGGGTCCAGGTAGTCCTATATGGGACGATTTGGACCCCAACAGTAATCTTCTTTTGCAGTCACAGTTTCCTTTTTTGAATCCAAATCAGCAAGAATTTCATGTTATAAGTGATGCTGCTCGGAGACAACACGAAGATAACACAGGACCAGGCTCTACCTCTTGA 1017 0.4071 MKSEKSTEDKKSVDEITKVINEIKSKQCEMEKGKEKMFVEDVSMQHSPLKKICISQHQNTNQSSSHQIPSSKIVFPFAFEGSQYPISFPHKSRTTNFLPPFSPPLHPTSPLSAPNSVLPRQRQQIQNKQLLRPQARPLNAGKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDNAENAAMAYDREAFKLRGENAKLNFPELFLNKDKPPTSSSSSSTIAQTPSAPSLHESSSSTSTKFQNPNQPESIHDKYSLQAINDSKTGENNSQLVLGEMAGWLEAIPAGWGPGSPIWDDLDPNSNLLLQSQFPFLNPNQQEFHVISDAARRQHEDNTGPGSTS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1325 338 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700|GO:0006355
Tpr4g1325 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 4 320 - -
Tpr4g1325 338 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Tpr4g1325 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 320 - -
Tpr4g1325 338 MobiDBLite consensus disorder prediction 207 246 - -
Tpr4g1325 338 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700|GO:0006355
Tpr4g1325 338 SMART rav1_2 143 206 IPR001471 GO:0003700|GO:0006355
Tpr4g1325 338 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Tpr4g1325 338 CDD AP2 142 202 IPR001471 GO:0003700|GO:0006355
Tpr4g1325 338 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Tpr4g1325 338 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1325 Tpr-Chr4 12788962 12790656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1325 130 294 AP2-EREBP Transcription Factor Family AT2G20880 51.724 8.73e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g1325 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1325 - - cam:101497734 345.895