Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1314 ATGGCCATGGATCAATACATGAACAACTCTGCATCCCAAATCGACTCCTTTGAAGATAAACCGTCTTTGAAAACCTGGAAAACCTCCACAGATGTGATTTCAAATTCTGACAGAAATTCATCTGGTGGTTTCGACTGCAATATCTGCCTGGATTGTGTGCAAGATCCGGTAGTAACTTTTTGCGGTCATCTTTACTGTTGGCCTTGCATTTACAAATGGCTTCAAGTACAAAGTAGTATCACTTCCGAAAACGAAGAGATGCAGAAGCCACAATGTCCGGTATGCAAATCAGAACTCTCTCAATCTTCCTTAGTTCCATTATATGGCCGTGGCCAATCCACAACAACCTCCAAAGGCAAAACTCAAACTCATCAAGTAGGTATTGTTGTACCTCGAAGACCTACCGGTCCTAGATCATATAATGCTGCAACCGTTTCCCAACCTACTTATCAAAGTTATCATCATCCTCAACAATTCAACTCAATTCCTAACAGTTACCCCTCACCGATGTTTAGTACAAGTGGTTCGGCACTAGACAATACATACGGAATCTTCGGTGAAATGATTTATGCAAGAGTGTTTGGTAACCAAGTGGAAAACATGTATACATATCCTAATTCATATAGTTTTATAGGGAATAATAATCCAAGGGTTAGAAGACATTTGATGCAAGTTGATAGATCACTCAGCAGAATATGTTTTTTCCTCCTTTGTTGCTTAGTTTTGTGTCTTCTCTTATTCTGA 744 0.3952 MAMDQYMNNSASQIDSFEDKPSLKTWKTSTDVISNSDRNSSGGFDCNICLDCVQDPVVTFCGHLYCWPCIYKWLQVQSSITSENEEMQKPQCPVCKSELSQSSLVPLYGRGQSTTTSKGKTQTHQVGIVVPRRPTGPRSYNAATVSQPTYQSYHHPQQFNSIPNSYPSPMFSTSGSALDNTYGIFGEMIYARVFGNQVENMYTYPNSYSFIGNNNPRVRRHLMQVDRSLSRICFFLLCCLVLCLLLF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1314 247 Pfam Zinc finger, C3HC4 type (RING finger) 46 95 IPR018957 GO:0046872
Tpr4g1314 247 CDD RING-HC_AtRMA_like 44 97 - -
Tpr4g1314 247 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Tpr4g1314 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr4g1314 247 ProSiteProfiles Zinc finger RING-type profile. 46 96 IPR001841 -
Tpr4g1314 247 SMART ring_2 46 95 IPR001841 -
Tpr4g1314 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 127 IPR013083 -
Tpr4g1314 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 247 - -
Tpr4g1314 247 SUPERFAMILY RING/U-box 45 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1314 Tpr-Chr4 12674346 12678045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1314 39 247 C3H Transcription Factor Family AT4G28270 39.906 2.65e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1314 K10666 - gmx:100785491 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1314 4 12674346 12678045 Tpr4g1314 4 12674346 12678045 ECH