Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1305 ATGAATAGCAGTAACGGAGGGATGATGGGTTTCAGTAAATCATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGATCAGCATCATCATCACCTTTCACAGTGTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTTAAATATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTTGTCCTTCCCATTCAGACTACTGCCTTTCATTCCAACAATTTCTTTCATCATCCTATTCCCACTTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCCGAGCCAGGAAGATGTAGGAGGACTGATGGAAAAAAGTGGAGATGCGCGAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGGCACAGTCGTCATCCACTGTGACAACTGTCGCTGGTGGCGGCAGCATACCTGGAAACTTCCAGAACCTTCCCACAACAAATTCCTTTGGTAGTCTTCAAAATACTACTGCTTCTGGAACTGACCGTGCTGATTATCATCTTGATACCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGTCTTAAATCTGAGGGTGGAGAACATAGCTTCTACGCAGAAGGTTCGGGAGGAGGCAACAAGGGTCTCCAAATGGAGTCGCGGCTGGAAAATGCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTATTCTGCATCAAAATCAAGTAATGATTCCATGTTGCAAAGTGATTATCCCCGGCATTCATTTTTATCTAGTGAATATGGATCTGGTCAAGCTGTGAAGGAAGAGGGCCAGCCTCTTCGACCCTTTTTCAACGAATGGCCTAAGAGGAGGGAGTCATGGTCAGGTCTAGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATACCTATGTCATCTTCTGATTTCTCTGGCACAAGCTCTCAGTCGCCACACGATAACTAG 1026 0.4639 MNSSNGGMMGFSKSSAAATAAAAAAAAGSASSSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQTTAFHSNNFFHHPIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVESQTMAQSSSTVTTVAGGGSIPGNFQNLPTTNSFGSLQNTTASGTDRADYHLDTIPYGIPSKEYRYLQGLKSEGGEHSFYAEGSGGGNKGLQMESRLENAWPLMSTRVSSYSASKSSNDSMLQSDYPRHSFLSSEYGSGQAVKEEGQPLRPFFNEWPKRRESWSGLEDERSNQTAFSTTQLSISIPMSSSDFSGTSSQSPHDN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1305 341 PANTHER - 32 333 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tpr4g1305 341 MobiDBLite consensus disorder prediction 306 341 - -
Tpr4g1305 341 Pfam WRC 97 139 IPR014977 -
Tpr4g1305 341 SMART QLQ_2 33 69 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr4g1305 341 MobiDBLite consensus disorder prediction 299 341 - -
Tpr4g1305 341 MobiDBLite consensus disorder prediction 275 294 - -
Tpr4g1305 341 Pfam QLQ 34 68 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr4g1305 341 ProSiteProfiles QLQ domain profile. 34 69 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tpr4g1305 341 ProSiteProfiles WRC domain profile. 96 140 IPR014977 -
Tpr4g1305 341 PANTHER GROWTH-REGULATING FACTOR 5 32 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1305 Tpr-Chr4 12600679 12604913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1305 34 139 GRF Transcription Factor Family AT3G13960 61.468 3.54e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tpr4g1305 WRC 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1305 - - gmx:100787226 478.404