Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1300 ATGTCAACAGCCAAACAGGTTATTACATGCAAAGCTGCAGTATGTTGGGGGGCAGGAGAACCAGTGAAAGTGGAAGAGATACAAGTAGATCCACCAAAGGCAACAGAAGTGCGAGTTAAGATGTTGTGTTCTAGTGTCTGCCACACAGACATCTCAAGCCTTAAAGGATTCCCACATAATCAATTTCCTCTAGCACTTGGACATGAAGGAATTGGTGTTGTTGAGAGTATTGGTGATGAAGTAACAAATCTAAAGGAAGGTGATTTTATACTTCCAACATACATAGGAGAATGTGGTGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTTTGACACATCCTGTGAGATTGACTGGTCTAATGCCAGATAACACTTCAAGGTTGTCTGTAAAAGGTCAAACACTATACCATGTTTTGAGTTGTGCTACATGGTCAGAGTATGTGGTTGTTGATATCAACTACCTTGTTAAAGTTGATCCAACCATTAATCTAGCATATGCTAGTTTCATTTCATGTGGATTTTCAACTGGTTATGGAGCTTCTTGGAAGGAAGCTGATATTCAAAAAGGTTCAACTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGTGGGGCCAAGATGATGGGAGCAAGTGAGATAATTGGGGTTGACAAAAATGTGATGAAGAAAGAAATAGGAGAAGCTTTTGGAATGACCCACTTTATACATTCTAATGTTCCTAATAAATCTGCTTCAGATTTGGTTAATGAGTTTACTGGAAGGGGTGTAGATTATTGCATTGAGTGCACTGGAGTTGCACCTTTGCTTACTCAATCTTTGGAAGCCACAAAAGTGGGAACAGGTAAAGCAATTGCAGTTGGTATGGGAGTAGAACTTGTTGTACCATTTGGACTTCTTGGCATTCAGTTTGGTAGAACCTTAAAAGGTTCTGTTCTTGGAGGTATAAAAACCAAAACAGATATTGCCACCATAGTCAACAAATGTCAAAAAGAGGAATTCCCTCTTCAAGAACTTTACACCCATGAGGTCCCTTTGGTAGATATAGGCAAAGCATTTGAGTTATTGAAAGAACCAAATTGTGTGAAAGTTGTTATCAAGATGTGA 1122 0.3913 MSTAKQVITCKAAVCWGAGEPVKVEEIQVDPPKATEVRVKMLCSSVCHTDISSLKGFPHNQFPLALGHEGIGVVESIGDEVTNLKEGDFILPTYIGECGECENCVSGKTNLCLTHPVRLTGLMPDNTSRLSVKGQTLYHVLSCATWSEYVVVDINYLVKVDPTINLAYASFISCGFSTGYGASWKEADIQKGSTVAVFGLGAVGLGAISGAKMMGASEIIGVDKNVMKKEIGEAFGMTHFIHSNVPNKSASDLVNEFTGRGVDYCIECTGVAPLLTQSLEATKVGTGKAIAVGMGVELVVPFGLLGIQFGRTLKGSVLGGIKTKTDIATIVNKCQKEEFPLQELYTHEVPLVDIGKAFELLKEPNCVKVVIKM* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1300 373 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 372 - -
Tpr4g1300 373 Pfam Zinc-binding dehydrogenase 202 322 IPR013149 -
Tpr4g1300 373 CDD liver_alcohol_DH_like 8 372 - -
Tpr4g1300 373 Gene3D - 13 368 - -
Tpr4g1300 373 Gene3D - 179 316 - -
Tpr4g1300 373 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Tpr4g1300 373 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Tpr4g1300 373 SUPERFAMILY GroES-like 3 190 IPR011032 -
Tpr4g1300 373 SMART PKS_ER_names_mod 17 371 IPR020843 GO:0016491
Tpr4g1300 373 PANTHER ALCOHOL DEHYDROGENASE 5 372 - -
Tpr4g1300 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 334 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1300 Tpr-Chr4 12567371 12570734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1300 36 174 Monolignol Biosynthesis Gene Families AT4G37970 31.915 6.49e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1300 K00121 - gmx:100798341 582.793