Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1273 ATGCTCTCCAAAGAGACTCAAGAAGCAGGTTTCGGAATTGAACCGGATGAATTAGCATCCATCATTAGATCCCACGACACTAAATGTTTAGATCAACATGAAGGAGTTGAAGGATTAGCAAAAGCTGTCCGTGTATCGTTTAAAGAAGGTGTTAATTCGAGCGACATAAAACATAGACAAGCTATTTATGGTCATAATCGTCATACCGAGAAACCCTCAAGGAGTTTTTGGATGTTTGTTTGGGATGCAATGCAAGACTTAACACTAAACATCCTTATTCTATGTTCTGTAGTTTCAATTGTTGTTGGAATCTTAACAGAAGGTTTTCCTAAAGGTATGTATGATGGAGTTGGGATCATACTATGTATTATTTTAGTGGTTCTTGTCACTTCAATAAGTGATTATAAACAGTCTTTGCAATTTAAGGATTTGGATAAAGAGAAGAAAAATGTCGGCATACATGTTACAAGAGATAGTAGAAGACAAACGGTTTCGATTCATGATCTAGTCGTTGGAGATATAGTTCATCTCGCAATCGGAGACATAGTTCCTGCTGATGGAATATTCATATCAGGTTTTAGTTTATTGATTGATGAATCGTGTTTATCCGGTGAGAGTGAAGCCGTGAATGTTGATCAACAAAAGCCTTTTCTTCTATCTGGAACCACGGTTCAAGACGGTTCTGCTAAGATGCTAGTGACATCGGTCGGAATGAGGACAGAATGGGGAAGATTGATGGAAACTTTGAATGAAGGTGGTGATGATGAGACACCTCTTCAAGTGAAACTAAATGGTGTTGCTACACTTATTGGAAAAATAGGGTTAGGTTTTGCATTGTTAACATTTTTGGTTCTTACCGGTAGGTTTTTGTTGCAGAAAATATCTCACGATAGTATCACTAAATGGTCTCTAAATGATGCATCTAAGCTTCTCAATTTCTTTGCAACTGCTGTTATTATAATAGTTGTCGCTGTTCCTGAGGGTTTGCCTTTAGCAGTTACATTAAGTCTGGCATTCGCAATGAAGAAATTAATGAATGATAAGGCGCTAGTTAGGCACTTATCGGCATGTGAAACAATGGGATCTGCTGGCTGTATTTGCACTGATAAAACTGGAACATTGACTACAAATCAAATGGTTGTCGACAAGATATGGATTTGCGAACAAAATAAGGCGATTAAAGGCAGCAATCGTGATGATAATGTATTAAAGAACTCGATTTCGGAGGAGATATTTGATCTCTTTTTGCAGTCAATATTTCAGAATACTGCCTCAGAGGTTGTTAAAGGTGAAGATGGAAAGACCAAGGTCGTCGGTACTCCAACAGAATCAGCATTGCTTGGATTTGGTTTGATTTTAGGAGGTGATTCTAAGTTTTACAATGACAAGTATAAGATAGTTAAGGTTGAACCGTTCAATTCAACCCGAAAAAAGATGTCAGTTCTTGTTTCTCTTAGCAATAACAAAACTAGAGCATTTTGTAAAGGAGCATCAGAAATAGTGGTTAAAATGTGTGACAAAGTTGTTAATTCAAAAGGTAAAGTTGTTGATTTGAATGAACAACAAAGAAATAGCATCAATGAAGTTATTAATAGTTTTGCTTCCGAAGCACTGAGAACACTCTGCATAGCTTTTACGGATATTGAAGGAGGCTCTGATGGTAATAACACTATTCCCGAGGATAAATATACTTTAATCGCTATTATTGGGATCAAGGATCCCGTAAGACCCGGAGTTAAAGAAGCTGTGAAGACTTGTTTGGAAGCTGGAATTACTGTTAGAATGGTTACTGGTGATAATATAAACACCGCTAAAGCTATAGCTAGAGAATGCGGTATTTTGACAGATGGATTGGCCATCGAAGGACCAGATTTTCGTAACAAGACTCAGCAAGAATTGGAACGGATCATACCTAAATTGCAGGTAATGGCTAGATCTTTGCCACTTGATAAGCACACCTTGGTGACCCATTTGAGGAAAGACTTTAATGAAGTTGTAGCAGTAACAGGAGATGGGACCAATGATGCTCCAGCATTGCATGAAGCTGATATTGGATTTGCTATGGGTATTGCTGGAACAGAGGTTGCAAAAGAGAATGCAGATGTAATTGTAATGGATGATAACTTCGCAACAATTGTCAATGTTACGAAATGGGGGCGTTCCGTTTATATTAACATACAAAAGTTTGTCCAGTTCCAGTTAACGGTTAATGTCGTAGCTCTCTTGCTAAATTTTGTTTCAGCTTGTGTATCAGGTTCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATTATGGACACATTAGGTGCATTGGCATTGGCAACAGAACCACCACATGATGGATTAATGAAGAGACCACCTATTGGAAAAAATGCAAAGTTCATCACTGCAGTTATGTGGAGGAATATCATTGGTCAAAGTCTTTATCAAACTATTGTTCTTTTGATTCTGAAATTTCGTGGCGAACAAATTCTTAATCTCAAAGGACCTGATGCTGCCACTATTCTTAATACTGTCATTTTCAACACCTTTGTGTTTTGCCAGGTATTCAACGAGGTAAATAGTCGTGACATGGAAAAGATAAATGTATTCCAAGGCCTATTCAGTAGCTGGATTTTTCTGATGGTAATAGCCGGAACAGTTTGTTTTCAAGTCATAATAGTCGAGTTTCTTGGTACTTTTGCTCAAACAGTGCCGCTGTGTCGTGACTTATGGTTAACAAGTGTGATGATTGGTGCTGTAAGTTTAGTAGTAGCTGTTGTTTTGAAGTGCATTCCTGTTCCTGTCAAGAATTACGTCGCACCGCGTCATGACGGTTATGAGCGGCTCCCAACTGGACCAGAGTTAGCATGA 2862 0.3829 MLSKETQEAGFGIEPDELASIIRSHDTKCLDQHEGVEGLAKAVRVSFKEGVNSSDIKHRQAIYGHNRHTEKPSRSFWMFVWDAMQDLTLNILILCSVVSIVVGILTEGFPKGMYDGVGIILCIILVVLVTSISDYKQSLQFKDLDKEKKNVGIHVTRDSRRQTVSIHDLVVGDIVHLAIGDIVPADGIFISGFSLLIDESCLSGESEAVNVDQQKPFLLSGTTVQDGSAKMLVTSVGMRTEWGRLMETLNEGGDDETPLQVKLNGVATLIGKIGLGFALLTFLVLTGRFLLQKISHDSITKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNQMVVDKIWICEQNKAIKGSNRDDNVLKNSISEEIFDLFLQSIFQNTASEVVKGEDGKTKVVGTPTESALLGFGLILGGDSKFYNDKYKIVKVEPFNSTRKKMSVLVSLSNNKTRAFCKGASEIVVKMCDKVVNSKGKVVDLNEQQRNSINEVINSFASEALRTLCIAFTDIEGGSDGNNTIPEDKYTLIAIIGIKDPVRPGVKEAVKTCLEAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTQQELERIIPKLQVMARSLPLDKHTLVTHLRKDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFATIVNVTKWGRSVYINIQKFVQFQLTVNVVALLLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGKNAKFITAVMWRNIIGQSLYQTIVLLILKFRGEQILNLKGPDAATILNTVIFNTFVFCQVFNEVNSRDMEKINVFQGLFSSWIFLMVIAGTVCFQVIIVEFLGTFAQTVPLCRDLWLTSVMIGAVSLVVAVVLKCIPVPVKNYVAPRHDGYERLPTGPELA* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1273 953 PRINTS H+-transporting ATPase (proton pump) signature 526 544 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g1273 953 PRINTS H+-transporting ATPase (proton pump) signature 669 685 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g1273 953 PRINTS H+-transporting ATPase (proton pump) signature 701 726 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g1273 953 PRINTS P-type cation-transporting ATPase superfamily signature 198 212 - -
Tpr4g1273 953 PRINTS P-type cation-transporting ATPase superfamily signature 367 381 - -
Tpr4g1273 953 PRINTS P-type cation-transporting ATPase superfamily signature 567 578 - -
Tpr4g1273 953 PRINTS P-type cation-transporting ATPase superfamily signature 589 599 - -
Tpr4g1273 953 PRINTS P-type cation-transporting ATPase superfamily signature 669 688 - -
Tpr4g1273 953 PRINTS P-type cation-transporting ATPase superfamily signature 693 705 - -
Tpr4g1273 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 369 375 IPR018303 -
Tpr4g1273 953 Gene3D - 50 250 - -
Tpr4g1273 953 CDD P-type_ATPase_Ca_PMCA-like 58 802 - -
Tpr4g1273 953 Gene3D - 82 928 - -
Tpr4g1273 953 Gene3D - 364 714 IPR023214 -
Tpr4g1273 953 Pfam Cation transporter/ATPase, N-terminus 33 99 IPR004014 -
Tpr4g1273 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 34 930 IPR023298 -
Tpr4g1273 953 SFLD p-type atpase 349 721 IPR044492 -
Tpr4g1273 953 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 27 930 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tpr4g1273 953 SUPERFAMILY Calcium ATPase, transduction domain A 153 248 IPR008250 -
Tpr4g1273 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 465 615 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g1273 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 119 431 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g1273 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 635 757 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g1273 953 SMART Cation_ATPase_N_a_2 30 104 IPR004014 -
Tpr4g1273 953 PANTHER CALCIUM-TRANSPORTING ATPASE 1 937 - -
Tpr4g1273 953 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 373 579 IPR023299 GO:0000166
Tpr4g1273 953 PANTHER CATION TRANSPORTING ATPASE 1 937 - -
Tpr4g1273 953 Pfam E1-E2 ATPase 154 345 - -
Tpr4g1273 953 Pfam Cation transporting ATPase, C-terminus 754 927 IPR006068 -
Tpr4g1273 953 SUPERFAMILY HAD-like 366 774 IPR036412 -
Tpr4g1273 953 SFLD Haloacid Dehalogenase 349 721 - -
Tpr4g1273 953 Gene3D - 377 574 IPR023299 GO:0000166
Tpr4g1273 953 Pfam haloacid dehalogenase-like hydrolase 365 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1273 Tpr-Chr4 12289288 12293901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1273 2 950 Primary Pumps ATPases AT3G57330 69.474 0.0 1357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1273 K01537 - gmx:100801260 1577.38