Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1269 ATGACTAGGAGGAAGGTTAAACTTGCCTTTATCTCCAGTAATTCGGCAAGGAAGGCAAGCTATAACAAAAGAAAGAGGGGCATCATCAAGAAGGTGAGAGAACTCACCGTTCTTTGTGATGTTCCGGGATGTATTATAATTTCAAATCCTTTTAATTCTGATGAAACAGCGGTGTTTCCAGATCGAGAGGGAGCTATGCAGGTGATTGAGAGATATCGTAATACAGCTATGAAGGACGAGTCAAAAAATGTTAACCAACAGAGCTTCCTCTTGCAGAGGATTACTAAAGGCAGAGAGAAACTTGAAAGGCTGAGACATGACAATCATGAGAAGGAGACGGGCATTCGTATGCTTGACTGCATTCAAAACAATAAGTTGCCTGATAATTTATCCATTCCGGATCTTCATGATTTGGATAAGATAGTTGAGAAAAATCTGAAAGAGATTGAGAACAAGCTTGTTCAGCTCAATTTATCTAATAATTAA 486 0.3889 MTRRKVKLAFISSNSARKASYNKRKRGIIKKVRELTVLCDVPGCIIISNPFNSDETAVFPDREGAMQVIERYRNTAMKDESKNVNQQSFLLQRITKGREKLERLRHDNHEKETGIRMLDCIQNNKLPDNLSIPDLHDLDKIVEKNLKEIENKLVQLNLSNN* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1269 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tpr4g1269 161 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Tpr4g1269 161 Coils Coil 146 161 - -
Tpr4g1269 161 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Tpr4g1269 161 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr4g1269 161 PANTHER MADS BOX PROTEIN 2 156 - -
Tpr4g1269 161 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 156 - -
Tpr4g1269 161 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Tpr4g1269 161 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g1269 161 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g1269 161 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1269 Tpr-Chr4 12245673 12246347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1269 1 149 MADS-box Gene Family AT5G26630 38.667 1.73e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g1269 SRF-TF 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1269 - - gmx:100792290 172.555