Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1252 ATGGGTAGGGGAAAAATTGAGATTAAAAGGATTGAAAATGCTAATAGTAGACAAGTTACATTTTCTAAGAGAAGAACTGGGTTGTTGAAAAAGGCTCAGGAGCTAGCTATTCTTTGTGATGCTGAGGTTGCTGTTATCATTTTTTCAAACACAGGGAAACTTTTTGAGTTTTCAAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCACGGATTCTTCAGAGAGTGCATCGGTAGAATATAAAACAGAGAAGGATGATACTAAGATGGTGGAGATTCTTAAAGATGAAATTGCAAAACTAGAAACAAATCAACTACGGCTGTTGGGAAAGGACTTAACAGGATTGGGTTTAAAGGAACTGCAACATCTAGAGCAGCAAATTAATGAGGGACTATTATCCGTGAAGGAGAGGAAGGAAGAATTGCTTATGGAACAACTGGAGCAGTCTAGAATACAGGAGCAGAAGGCTATGCTGGAGAATGAAACTTTGCGAAGACAGGTTGAGGAGCTTCGATGCTTGTTTCCGATAGCAGAACGTGTAATGCCAACTTATCTTCAGTATCACCATGTGGAAAGAAAGAATTCATTTGTAGATAACAGTGTTAAATGTCCCAGCTTCGCCAGAAACTGTGCAAATGATAAAGCTGATTCAGACACCACATTGCATCTAGGGCTACCAACTGATGTTCGTAATAAGAAGACTCCTGAGAAAAAAAAAATTTCTAATGATTCGTAG 744 0.3858 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKTEKDDTKMVEILKDEIAKLETNQLRLLGKDLTGLGLKELQHLEQQINEGLLSVKERKEELLMEQLEQSRIQEQKAMLENETLRRQVEELRCLFPIAERVMPTYLQYHHVERKNSFVDNSVKCPSFARNCANDKADSDTTLHLGLPTDVRNKKTPEKKKISNDS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1252 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 232 - -
Tpr4g1252 247 Coils Coil 149 176 - -
Tpr4g1252 247 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g1252 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr4g1252 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Tpr4g1252 247 PANTHER MADS BOX PROTEIN 1 232 - -
Tpr4g1252 247 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Tpr4g1252 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr4g1252 247 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1252 Tpr-Chr4 12072258 12076659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1252 1 247 MADS-box Gene Family AT5G13790 54.251 4.69e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr4g1252 K-box 3.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1252 - - rcu:8259342 353.214