Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1249 ATGAATCTCCATCGAGAAACACTACAAAAAAAATACACAATGAGCAAAATAATTAGTTCTTCTCTTCTTATATCTTTTCTCATTTTTTCACACTTTGTGATTGAAATTCATGGAAACAAACAAGTTAAAGCTCTTGACAATCTTCACAAAGAAAAATATAGAGTAAATTCACAAATTGATAAAAGTGAATTTGAGGTACAAGATATTGTGTATGAAGAAGCTATTGTTCATTCTCAAGAAGGACTTAAAGAGAAGGATAGGATTAAGAGTCTTCCAGGACAACCCTTTGTGAAATTCTCTCAATATGGAGGGTATATCACATTGGATAAGTCTGCTGGTAGTGCCTTTTATTATTATTTTGTTGAAGCTCAACAATCTAAAGAAACACTTCCTCTTCTTCTTTGGCTCAATGGAGGTCCCGGATGTTCATCTCTGGCCTATGGAGCAATGCAAGAATTGGGACCTTTCAGAGTAAACAGTGATGGCAAAACACTACACCAAAATAGATACTCATGGAACCATGCTGCAAATGTTTTGTTCTTGGAGTCACCTGTTGGAGTAGGATTTTCTTATTCAAATAAATCATCAGATTATGATATCAATGGAGACAAGAGAACAGCTACACTCAACTATTTATTTTTGGTAAATTGGTTGGAAAGATTTCCAGAATATAAAAATAGAGATTTCTATATTTCTGGAGAAAGTTATGCTGGACATTATGTTCCTCAACTTGCTCATACCATTCTCTATCATAACAAAAAGGCAAAGACAATCATTAACCTCAAAGGAATCTTGATAGGGAATGCAGTAATCAATGATGATACAGACTCAACAGGAATGTATGATTATCTTGCAAGTCATGCTATCATCTCAGACAGAGCAGCTTATGCTATCAACAAAAACATTTGTGATTTCTCATCAGATAATAATCTCACAAGTGAATGCAATGCAATTGCTGATGAAGTTACTTTGGATCTTGCATTCATTGATTTATATAACATTTATGCCCCAACATGCAAAAATGAAAATCTCACATCCAAGCCCAATAAGTACACTATTGTGAATGATCCATGTGGTGAGTTTTATGTGTATGGTTATCTTAATAGAGAAGATGTTCAAGAAGCACTTCATGCTAATGTCACCAAACTCAAATATGAATGGAGTCCTTGCAGTAGTGTCATTAGACACTGGGTTGATAGTGCTTCAACAGTCCTTCCCCTTTTACATGAATTTCTCAATAATGGCTTAAGGGTTTGGATTTTCAGTGGTGATACAGATGGAAGGGTTCCTGTTACTTCAACTAAGTATTCAATTAAGAAGCTGAACCTTCCTGTTAAAAATAATTGGCACCCTTGGCTTTCCTATGGAGAGGTTGGTGGCTATACAGAAGTATACAAGGGAGGCCTAACATTTGCTACAGTGAGACAAGCAGGACATCAAGTGCCAAGTTACCAACCAGCAAGAGCTCTTACTTTGATTAAACATTTCTTAGATGGCACTCCTCTTCCTGCTCCTAAATTAAAAAACTAG 1530 0.3562 MNLHRETLQKKYTMSKIISSSLLISFLIFSHFVIEIHGNKQVKALDNLHKEKYRVNSQIDKSEFEVQDIVYEEAIVHSQEGLKEKDRIKSLPGQPFVKFSQYGGYITLDKSAGSAFYYYFVEAQQSKETLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHQNRYSWNHAANVLFLESPVGVGFSYSNKSSDYDINGDKRTATLNYLFLVNWLERFPEYKNRDFYISGESYAGHYVPQLAHTILYHNKKAKTIINLKGILIGNAVINDDTDSTGMYDYLASHAIISDRAAYAINKNICDFSSDNNLTSECNAIADEVTLDLAFIDLYNIYAPTCKNENLTSKPNKYTIVNDPCGEFYVYGYLNREDVQEALHANVTKLKYEWSPCSSVIRHWVDSASTVLPLLHEFLNNGLRVWIFSGDTDGRVPVTSTKYSIKKLNLPVKNNWHPWLSYGEVGGYTEVYKGGLTFATVRQAGHQVPSYQPARALTLIKHFLDGTPLPAPKLKN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1249 509 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 503 IPR001563 GO:0004185|GO:0006508
Tpr4g1249 509 Gene3D - 404 499 - -
Tpr4g1249 509 Gene3D - 358 394 - -
Tpr4g1249 509 PANTHER CARBOXYPEPTIDASE 23 503 - -
Tpr4g1249 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 180 IPR001563 GO:0004185|GO:0006508
Tpr4g1249 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 181 191 IPR001563 GO:0004185|GO:0006508
Tpr4g1249 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 217 242 IPR001563 GO:0004185|GO:0006508
Tpr4g1249 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 469 482 IPR001563 GO:0004185|GO:0006508
Tpr4g1249 509 Pfam Serine carboxypeptidase 93 499 IPR001563 GO:0004185|GO:0006508
Tpr4g1249 509 ProSitePatterns Serine carboxypeptidases, serine active site. 231 238 IPR018202 GO:0004185
Tpr4g1249 509 Gene3D alpha/beta hydrolase 82 341 IPR029058 -
Tpr4g1249 509 ProSitePatterns Serine carboxypeptidases, histidine active site. 469 486 IPR033124 GO:0004185
Tpr4g1249 509 SUPERFAMILY alpha/beta-Hydrolases 84 503 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1249 Tpr-Chr4 12046881 12052690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1249 366 502 Calmodulin-binding Proteins AT2G22960 33.577 4.85e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1249 K16297 - gmx:100783864 766.533