Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1223 ATGAAGAGATTGCGTTCAACCGAAGATCTTCACTCTTATGGTGAAAAGAACGGTGCTGATAAGAATTCAAATCTTTCTGTTAAGGATTCTAATTCTAATTCAAATCTGAACCGTTCGTTTTCTTCCACTGGTCAAAGAAGTTTTTACTATAAACAAGAGAATGTGAGGAAGAATTTGATATCTTCGTCGTCGTCTTCGTCGCGATTCGATAGGGATAGGGATAGGGATCGGACGGTGGAGGAAGATCGAGAAAGTTCTAGAATTGTTCGGAAGCGATCTGAACATGATTTCGATGGTTTTGATCGGAGGAAGGGTTTTGATCGGTATAGTCGTGATGGTGGTTACAGTGGAGGTGGAGATAGAGATAGAGATAGGAATTCGATTCATAGGTCGGAGAGTTTTTGTGGAGGTTCGAGGAGGGAGTTTCCGAAGGGGTTTCGGTCGGAGAGGGATCGATCAAGGAGGGAAGGGAGTGTGTCGTCGTGGAGGAGAGGTTTAAAGGATTTTGATGAGAGTAGTAGAGGGGGGAATAGTAGAGTTGAAGAGAGAATTGTGAGGTCACCAAAGGGTTTCTCGAGGGACGTGAAATCCCCTAGTTGGTCTAAGGATTCTGAGAGTGAACAATCGAAGAAGAGATCTTCGGAGTCTCCGAGGGTGTTTAGAGAAGCTACTAAGTCAATATCAAAGTCACCTTCTTGGTCTAAGGATTCGGAGAGTGAACAATCGAAGAGTGTTAGTGTGGAGGTGAAGAAAAGTGATGAGTTGTTGCAACAGGTTCAGAGTGGTAGTGGTAGTGAAATGGAAGAGGGGGAGCTTGTACCTGAACCCGCCGCTAAAACTGAGGCCGAAGCAGTGTGTAATGATGCTGCAGCTGGAAGGGAAAGATTGCAAGCCTCTGAGGATGAACAAGTGCACAAGAAGAATGAATTTGGTTCGAGTGATGCAGATGTTGTTATGGAAGAAAAACAGATGTTGGGTGAGAAAGAGGTGAAACCTATGGAGGATGTTGATTCTGAGGTAAAAGTAAAAGATGCAGAGAAGGAAGTTCGTGAATTGTCTAAGAATCAAGATAAATCTACTAAGGAAATTGGTGTTAATAAGGATGAGATTAGAACTGTTGATAATGATAATGTTAAGAAGGATGTGTGTTTGAATGGTGATGATACTCGGCACAAGGAGGTGGAGAAGGAAAAGGCAGAAAATAACGAGAAGGCATTGCTTAAGAAGGAAAGGGGGGAAAATAACGAGAAGGTGTTGCTTAATGAAGAAGAGCATGAGGTGGACAAGGGTGTAGGTGGTGACAAACTTGACGGAAATGATGAAGGCTCAACAGAGAATACAGTTGGTGTTGAAGTGCAGGAAGAAACGATGATGGAGTGTGTGACAAATAATGTGAAGGATAAAGGCAAAAGCATTTCGGTCGCACCTGATGTTGCTCATGCTTCAGAAGATGGCTTGTGGATTGATAGAGGGTCAAAAGATCTCACAACAAGCCCCGCAGATGTCATGGAAGGTCCAAGCACAAGAGGGTTTGAACTTTTCTCTAGATCTCCAGTAAGAAAAGTAGAAAAGTCTGATCGCTCGGTTCTAAAAAAGGAGAATGATGACAGTCTTGGAATGGGGCAGCTTGTTCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATAGGTGCTCAGGAGACGGCGTCGCAAGCCCCTGGTTCTCCTAGTCAAGCACTGAGTGTTCAGTCTCTAAGTAATACATTTTGCACTAACTCAGATGGTTTTACTGCATCGATGTCATTTTCAGGTTCACAATCACTCTATCACAATCCAAGTTGTTCGTTAACGAGAAATTCAGTGGACTATGAACAATCTGTTGGCAAATCGGTTGGTAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGGCTGAACCCAAGCAGAAAGAAGTTCCCTCTGGTCAGAGAACTTCGAGTAATGGGAACGGCTCTCTTTACCAGCCTCAAGCATCATGGGGAATTTTAGATACTCAAGCTTTGAAAGGACAACCTTCTAGGCCTCTTGAAGGAAGCTCAAAAATGGGAAATGGGCTTGAAAGGCAATTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACAACATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCACATGACAATGGATCGAATTATAGTTTCGAGAAGAGGGAGGTTAGAGAAAGAAGTAGCAGTAGTCTACATCGATCAACTAGCCAGAAGGGACAAGATAATTTTCTGATGGGTGGACTTGAATTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAACCTGTGCAAGCAATGTCCAGAAAGTTCCATGAAATGAATGGACAGTACATAACTCGTATGAAAGAGGGTATTCGGGAACTCATGGTCAGTGCAGATAACCAGGGACAAATACTTACTTTTCAAAATGTTTTGCAGAACAGGTCTGACATATCCTATGATGTCCTAGTGAAGTGTCACCTAGCGCAACTGGAAATTTTGGTTGCATTAAAAACTGGTGTAGTCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAATTTTTCTAAACTTGAAGTGTAGGAATTTATCATGTCGAAATCAGTTGCATGTAGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAACGGTTTTTGCAGGGAATGTATGTGTGTTGTGTGTTCTAAGTTTGACAATGCGTCGAGCACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTACGAGAATCTTATATTAGAAATGGACTTAGTACTACTGGAACGAAAGGGACGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGATTGGTCACCCGAATCTCTTTGCAAGGAACTTGAATATGTGAAGAGAATCTTTTCTGCTAGCAAGGATATTAGAGGGAGACAGTTGCATGAGATTGCGGATAAAATGTTGCCGAGCCTGGCTATCAAGTCTAACATTCCTGAGGTTTTAAGACACATCATGTCTTTCTTTTCTGATTGTGATTCTTCCAAATTACCCATGACAACGATCTTTTCTGGTAAGGAACAAGTCAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTAAAATCTATTTATTCAGAAAAGCCAGCTCTGTTAGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGTTGCAGATGAGTAGTATCCAAAAAGACTTCTGTTTTGATGAATTAGAAAGTATAATAAAAATCAAACATGCAGAGGCCAAAATGTTCCAATCTCGTGCTGATGATGCTAGGAGAGAAGCTGAAGGGTTAAAACGCATCGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGCCAATCGAATTGCCAAGCTGCGTTTTGCCGAGACAGATGATTTGCGTAAACAAAAATTCGAAGAACTCCAAGCAATAGAGAGGGCACATCATGAGTATTTGAACATGAAAATGAGAATGGAGTCAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3675 0.4199 MKRLRSTEDLHSYGEKNGADKNSNLSVKDSNSNSNLNRSFSSTGQRSFYYKQENVRKNLISSSSSSSRFDRDRDRDRTVEEDRESSRIVRKRSEHDFDGFDRRKGFDRYSRDGGYSGGGDRDRDRNSIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGGNSRVEERIVRSPKGFSRDVKSPSWSKDSESEQSKKRSSESPRVFREATKSISKSPSWSKDSESEQSKSVSVEVKKSDELLQQVQSGSGSEMEEGELVPEPAAKTEAEAVCNDAAAGRERLQASEDEQVHKKNEFGSSDADVVMEEKQMLGEKEVKPMEDVDSEVKVKDAEKEVRELSKNQDKSTKEIGVNKDEIRTVDNDNVKKDVCLNGDDTRHKEVEKEKAENNEKALLKKERGENNEKVLLNEEEHEVDKGVGGDKLDGNDEGSTENTVGVEVQEETMMECVTNNVKDKGKSISVAPDVAHASEDGLWIDRGSKDLTTSPADVMEGPSTRGFELFSRSPVRKVEKSDRSVLKKENDDSLGMGQLVLTLSLPNVLLPIGAQETASQAPGSPSQALSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTRNSVDYEQSVGKSVGSRPLFQGFDWQALSQAEPKQKEVPSGQRTSSNGNGSLYQPQASWGILDTQALKGQPSRPLEGSSKMGNGLERQLSFHKQLSGQSRQHDDVRSPTQSVGSHDNGSNYSFEKREVRERSSSSLHRSTSQKGQDNFLMGGLEFVKTIIARIVSEPVQAMSRKFHEMNGQYITRMKEGIRELMVSADNQGQILTFQNVLQNRSDISYDVLVKCHLAQLEILVALKTGVVHYLHLDDNISSSDLAQIFLNLKCRNLSCRNQLHVDECDCKLCVQKNGFCRECMCVVCSKFDNASSTCSWVGCDVCLHWCHTDCGLRESYIRNGLSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSPESLCKELEYVKRIFSASKDIRGRQLHEIADKMLPSLAIKSNIPEVLRHIMSFFSDCDSSKLPMTTIFSGKEQVKENNGVAGPSQEAAWLKSIYSEKPALLERPASILPRFDQNDKRTLVQELQMSSIQKDFCFDELESIIKIKHAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYANRIAKLRFAETDDLRKQKFEELQAIERAHHEYLNMKMRMESDIKDLLSKMEATKMNLAM* 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1223 1224 Pfam Coiled-coil region of Oberon 1097 1212 IPR032535 -
Tpr4g1223 1224 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1224 IPR004082 -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 1 94 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 108 360 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 294 360 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 220 240 - -
Tpr4g1223 1224 PANTHER PROTEIN OBERON 4 1 1224 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 1 16 - -
Tpr4g1223 1224 Coils Coil 1132 1163 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 702 729 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 393 441 - -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 784 806 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 823 838 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 838 853 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 864 885 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 910 930 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 983 1002 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1119 1139 IPR004082 -
Tpr4g1223 1224 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1158 1180 IPR004082 -
Tpr4g1223 1224 Coils Coil 342 362 - -
Tpr4g1223 1224 CDD PHD_OBE1_like 903 962 - -
Tpr4g1223 1224 Coils Coil 1201 1221 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 17 66 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 251 265 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 702 753 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 108 219 - -
Tpr4g1223 1224 Pfam PHD - plant homeodomain finger protein 873 996 IPR032881 -
Tpr4g1223 1224 Coils Coil 396 416 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 730 746 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 393 452 - -
Tpr4g1223 1224 MobiDBLite consensus disorder prediction 67 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1223 Tpr-Chr4 11845100 11850310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1223 873 1021 PHD Gene Family AT5G57380 26.846 6.17e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1223 - - mtr:MTR_4g039650 1724.91