Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1217 ATGGCATTTCACGTTGCTTGTCCAATTACATGTCGGAGAATTTGTTTCTGTTCGTTAGGGTTTCCGCGTTCTCTTCAACGAACGAATAACCCTACGAGTGGTTTTCTCCAAGATGTTACGGTGCTCGGTGATTTTCTATCGGATAATAAACGGAAAGATGATGGTACGATTCAAGTTGTTGTTCCTAAAGTTGTTCCGCCGCCGCCGGAGATTGTGACTGTTAGTGGTGGTGATGTGCTTATTGATGAATCTGCTTCTATGAAAGCTAAACGTCTTGCTCTTCAGAAAAAAGGTGCTGCTGCTATGATTGCTGCTGAGGAATATGCTAGGAAGTTTGAGTCTGGTGAATTTCTGGATACATTGGGAAATGTTAACGGAGAAGAACAAGGGCAATCCAATGTCAAGGTCTGTTGTCGAATGTGCAATCGCTTTGAGAACGAAGGAAGTGAGAAAGCGAAAAAGATGCTGTCGTGTAAAAGGTGTAGTAAGAAGTACCATAGGAGCTGCTTGAAAAGTTGGTCTAATAATAGAGATTTATTTCATTGGAGTTCGTGGACCTGTCCTGTTTGTCGAATTTGTGAGGCTTGCAGAAGGACCGGTGATCCAAGTAAATTCATGTTTTGCAAAAGATGTGATGGTGCTTACCATTGTTACTGTCTGCAACCAACTCATAAGAATGTTAGTACTGGGCCCTATTTGTGCCCAAAACACGCAAAGTGTCACAGTTGCGCATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTCTGGGATACACGTGTTGTGACGCATGTGGAAGATTGTTTGTGAAAGGGAATTACTGTCCTGTTTGTCTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATCATTGCCAGCGCTGGGTACATTGCCAGTGTGATAATATTAGCGATGAAAGATATCACCAATTTCAAGTGGATGGGAATCTGCAGTATACATGTCCTACTTGTCGTGGGGAATGTTATCAGGTATGCACATGCCTTCAGTATATAATTACTTTTGTTTCTCAATGGAAGAAATGCTTTGAATGTTATTTTCTGAATGCACTGTATATCTGTATGTTTCAGGTCAAGAATCTTGAAGATGCTGTTCAAGAGCTTTGGAGGAGAAAGAATATCGCTGATAGCGATTTAATTACAAGCTTGAGGGCTGCAGCTGGTTTACCGACGCAAGAAGAAATATTTTCTATTTCACCATATTCTGACGATGAGGATAGTGGGACTCTGAAGATAAAGAGTGATTCAGCACGTTCCTTTAAGTTCTCTTTTAAGAATTTTTCCAATAACTCGCCTACGAAGATGAAAGATTATGGGAAGAAATCTTCAACCAAGAAGACTTCTAAGAAAAAGGACTCTCTGTCATTCATGACTGGTAAAATTGATGCACACCATAGTTTTGAAGGACATAGTTTTGATGACGATATCCAATCCCAGAGAAATGAAGGTCCTGACGTTTATTCATCACTTGCTACCGGAAGCCTTAGTCAAACTGAAGTTCCTTATCCTGTCAATCAGCCAGGGATTTTGAAACGTAAGTTTGTTGATGAGGTGATGGGCAGTGATGAAGAAAGGAAACCCAGAGTTGTTCGAATTAAAAGCAATAAGTCAAATATTTTGGATAGTGAAGAGGAGAGTGGAAAACATGGTGATAAGACTCAGAATGTTAAAGGGAAAAAGTTGGTTATAAATTTGGGAGCACGGAAAATTAATGTAGCTAGTTCTCCGCTGTCTGATAATGCAAGCTTCCAAAGAGATAAAGATCTTGTTACTGCCAATGGAAATGAAAATCTAGCCCATTTGACGAAGGGAAACAAGTTTGCATTAGATAGACATGATGGAACAGCTAGACATATTGACGGTAAAGGAAGTAGGGTTGACTCTGGCCAATCAAAACATCTAAAGGTTTCGGGAAGAGAAGGAAATATGATCAAGTTGGGAAAAGTCAAGCCAGGTGTTTCTGAATTCAACTTAACCTCTGGAAGAGGCAATATGTCTGATGGGCATGAAGTTGGTCCTTTAGAGCGATCTCACTCGGTGCGGGGAAAACGCAGTACTCATGGAATGGTTGCTCAAGCTGGATTAGATGCAGCATCAAGAGGTGAAATGACATATTTGGCGAAGCAGTCGGAAGGTAGCTCAGATGTATTTGACGAGACACATGACAATAATCACACGCCTTCACATTCTTTGCCAAAAGATTCGAAACCTTTACTGAGATTTAAATTCAAAAGGCCTAGCATTGAAAGTCAAAGTTCTCCTCATCAGGAAGAGAAGACCACAGTTAAGGGCCAGAGGTCGAAAAGGAAGAGGCCTTCACCTTTTAAAGAAATATCATTGTTTAATAACTCTGAAGGTGTAAGTCAATCTCCTGGAGACACTATAAATGATGAGATCATGGATGCAAACTGGATTTTGATGAAATTAGGAAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAGTTCTTGGCACAAGGGAGAGGTTACAGACATAGTTGAAGGCACCTCAAAGATACATGTTACTTGCGATGATGGAAAAGTGAGTATCGTGGAACTAATGCAGCAGGGGATCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAATCATGA 2658 0.4067 MAFHVACPITCRRICFCSLGFPRSLQRTNNPTSGFLQDVTVLGDFLSDNKRKDDGTIQVVVPKVVPPPPEIVTVSGGDVLIDESASMKAKRLALQKKGAAAMIAAEEYARKFESGEFLDTLGNVNGEEQGQSNVKVCCRMCNRFENEGSEKAKKMLSCKRCSKKYHRSCLKSWSNNRDLFHWSSWTCPVCRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPTHKNVSTGPYLCPKHAKCHSCASNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDHCQRWVHCQCDNISDERYHQFQVDGNLQYTCPTCRGECYQVCTCLQYIITFVSQWKKCFECYFLNALYICMFQVKNLEDAVQELWRRKNIADSDLITSLRAAAGLPTQEEIFSISPYSDDEDSGTLKIKSDSARSFKFSFKNFSNNSPTKMKDYGKKSSTKKTSKKKDSLSFMTGKIDAHHSFEGHSFDDDIQSQRNEGPDVYSSLATGSLSQTEVPYPVNQPGILKRKFVDEVMGSDEERKPRVVRIKSNKSNILDSEEESGKHGDKTQNVKGKKLVINLGARKINVASSPLSDNASFQRDKDLVTANGNENLAHLTKGNKFALDRHDGTARHIDGKGSRVDSGQSKHLKVSGREGNMIKLGKVKPGVSEFNLTSGRGNMSDGHEVGPLERSHSVRGKRSTHGMVAQAGLDAASRGEMTYLAKQSEGSSDVFDETHDNNHTPSHSLPKDSKPLLRFKFKRPSIESQSSPHQEEKTTVKGQRSKRKRPSPFKEISLFNNSEGVSQSPGDTINDEIMDANWILMKLGNDAIGKRVEVHQTSDSSWHKGEVTDIVEGTSKIHVTCDDGKVSIVELMQQGIRFVPQKQKRSKS* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1217 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 332 IPR013083 -
Tpr4g1217 885 ProSitePatterns Zinc finger PHD-type signature. 138 190 IPR019786 -
Tpr4g1217 885 PANTHER HISTONE ACETYLTRANSFERASE 370 879 - -
Tpr4g1217 885 PANTHER HISTONE ACETYLTRANSFERASE 2 336 - -
Tpr4g1217 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 247 IPR013083 -
Tpr4g1217 885 SUPERFAMILY FYVE/PHD zinc finger 182 243 IPR011011 -
Tpr4g1217 885 CDD PHD_SF 137 190 - -
Tpr4g1217 885 Pfam PHD-finger 275 330 IPR019787 -
Tpr4g1217 885 PANTHER PHD FINGER FAMILY PROTEIN 370 879 - -
Tpr4g1217 885 PANTHER PHD FINGER FAMILY PROTEIN 2 336 - -
Tpr4g1217 885 MobiDBLite consensus disorder prediction 756 788 - -
Tpr4g1217 885 ProSiteProfiles Zinc finger PHD-type profile. 273 332 IPR019787 -
Tpr4g1217 885 ProSiteProfiles Zinc finger RING-type profile. 138 191 IPR001841 -
Tpr4g1217 885 SUPERFAMILY FYVE/PHD zinc finger 273 331 IPR011011 -
Tpr4g1217 885 SMART ring_2 276 329 IPR001841 -
Tpr4g1217 885 SMART ring_2 138 190 IPR001841 -
Tpr4g1217 885 ProSiteProfiles Zinc finger RING-type profile. 276 330 IPR001841 -
Tpr4g1217 885 MobiDBLite consensus disorder prediction 546 566 - -
Tpr4g1217 885 ProSiteProfiles Zinc finger PHD-type profile. 135 193 IPR019787 -
Tpr4g1217 885 SMART PHD_3 137 191 IPR001965 -
Tpr4g1217 885 SMART PHD_3 275 330 IPR001965 -
Tpr4g1217 885 SMART PHD_3 192 238 IPR001965 -
Tpr4g1217 885 SUPERFAMILY FYVE/PHD zinc finger 127 193 IPR011011 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr4g1217 PHD 5.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1217 - - mtr:MTR_4g037745 1409.43