Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1212 ATGGAAGCGGTTGTGGTTGACGTCGGTTCTAAACTTCTCAAAGCTGGTTTTGCAATTCCTGATCAGACTCCTGCCATGATAATTCCCACTCAGATGAAACGGATGCTTGATGATGGTTCACCGGTTGATGAAGTCACCATTGATCCAGTCGTGCGAGGATATATCAGTGATTGGGATGCTGTGGAGGATTTGTTGCACCATGTTTTATATACTGGTCTTGGGTGGGAAATCGGCAATGAAGGAAACATACTATTTACAGACCCACTTTGTACTCCAAAGGCCAACAAGGAACAGTTGGTGCAACTAATGTTTGAAAACTTCAACATATCGGGGTTTTATGCATCAGAACAATCAGTGTTATCATTGTATGCTGTTGGACGTATCTCAGGGTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCGCCTGTGATTGAGGGTGCTGTTCACCACATCGGTTCCAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTCGCTCAAGAACTCGGCAAATCAAATCCGCAAGTAAATATCAGCATGTCTGATGTGGAGAAAATAAAAGAGCAATATTCATGCTGTGTTGAAGATGAGTTAGCTTATCAGAAAACCCTGTATTCTTGTCCTGTGGAGAAACATACGCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATACACGGTTGGTGAAGCTTTATTCCAGCCATCTCTGTTGGGTTTAGAAGCTCATGGCATTGTTGAGCAGCTTGTCCGTGCTATTTCAAATGTATCATCTGATAATCATCGACAGCTGCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCCATGATTGGTTTTGAAGTGAGGTTTCAGAAGGAATCTACCTTAAGTTCTTCAGCGGTTCAACCTACCCTGGTTAAGCCTCCAGAATACATGCCAGAAAATTTAAACACGTATTCTGCATGGGTGGGAGGTGCCATACTCGCTAAAGTAGTTTTTCCACAAAATCAGCATATAACAAAGGCAGATTATGATGAAACCGGGCCTTCCATTGTTCACCGGAAATGCTTCTGA 1071 0.4248 MEAVVVDVGSKLLKAGFAIPDQTPAMIIPTQMKRMLDDGSPVDEVTIDPVVRGYISDWDAVEDLLHHVLYTGLGWEIGNEGNILFTDPLCTPKANKEQLVQLMFENFNISGFYASEQSVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIGSRRFEFGGTDLTNFLAQELGKSNPQVNISMSDVEKIKEQYSCCVEDELAYQKTLYSCPVEKHTLPDGQVITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRAISNVSSDNHRQLLENTVVCGGTSSMIGFEVRFQKESTLSSSAVQPTLVKPPEYMPENLNTYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1212 356 Gene3D - 118 319 - -
Tpr4g1212 356 PANTHER BNACNNG31150D PROTEIN 1 355 - -
Tpr4g1212 356 Gene3D Actin; Chain A, domain 4 160 247 - -
Tpr4g1212 356 Pfam Actin 2 356 IPR004000 -
Tpr4g1212 356 SMART actin_3 1 356 IPR004000 -
Tpr4g1212 356 Gene3D - 4 350 - -
Tpr4g1212 356 PANTHER ACTIN 1 355 IPR004000 -
Tpr4g1212 356 CDD NBD_sugar-kinase_HSP70_actin 4 161 - -
Tpr4g1212 356 PRINTS Actin signature 40 62 IPR004000 -
Tpr4g1212 356 PRINTS Actin signature 95 108 IPR004000 -
Tpr4g1212 356 PRINTS Actin signature 120 139 IPR004000 -
Tpr4g1212 356 PRINTS Actin signature 212 228 IPR004000 -
Tpr4g1212 356 SUPERFAMILY Actin-like ATPase domain 126 356 IPR043129 -
Tpr4g1212 356 SUPERFAMILY Actin-like ATPase domain 2 133 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1212 Tpr-Chr4 11728389 11734328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1212 1 356 Cytoskeleton Gene Families AT3G12110 37.731 7.00e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1212 K16615 - gmx:100813266 661.759